These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 798 fasta sequence [TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGCAGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCTTCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGCTCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103162 [TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGCAGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCTTCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGCTCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGC ] [+] EMBL AK059587 [ ATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGT ] [+] EMBL BI801696 [ GCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATC ATCTGCTGTTTCTGTCCCTGTGCTAATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTaaaaa ] [+] EMBL AU057922 [ CTGCAAGTGCAACCCTTGCAACTGCTAAGAANCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTTGTGTGGGTGGGTGTGATCGTATCTGTATCATATCAAACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTGTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA755910 [GTCATCTTGAGTTGCTTGAGCTTATAGATTTCGACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGCTGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTGGCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCCATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCTGTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTCTGGTATATTAATTTACTGGTGTGTTGTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTATCTATCTAGTACCTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_8932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [ACGCTGATGGACAATGGATTCACTGCATGTTGAATGACCGACTGCAACTGATGAAGGGAATGTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCATGCTGCCTTGTGCATGCTTGGAGTTGGCTTGGAGCTGTGATGAGATTTGCAGACAAGATGGTGCTGTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTGGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCG] [-] EMBL CB965852 [ACGCTGATGGACAATGGATTCACTGCATGTTGAATGACCGACTGCAACTGATGAAGGGAATGTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCATGCTGCCTTGTGCATGCTTGGAGTTGGCTTGGAGCTGTGATGAGATTTGCAGACAAGATGGTGCTGTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTGGCGGAAAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGCGTCGCGCCGGAGAAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8932#0 TTTCTCTGTCAATAGATGATTCCATCACCAGAAATGGCCATAGGAGGAGCAATAATCTGC 60 consensus_8932#1 ------------------------------------------------------------ consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 AGCGACTAATTCGAGGCAGCGTATAGCATCGTGGCACGCAGAAGCTTGGGGATACACTCT 120 consensus_8932#1 ------------------------------------------------------------ consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 TCTTTGCCTCCGTCCAGTCCTATAAATGGTGGAGTCAGGGTGGAAGGCTATGCATTGTGC 180 consensus_8932#1 ------------------------------------------------------------ consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 TCATCATCTCAAAGCCCTTCATCTCCTTGTCATCTTGAGTTGCTTGAGCTTATAGATTTC 240 consensus_8932#1 ----------------------------GTCATCTTGAGTTGCTTGAGCTTATAGATTTC 32 consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 GACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGA 300 consensus_8932#1 GACAAGATGTCTTGCAGCTGTGGATCAAGCTGTGGCTGCGGCTCGAACTGCACGTGCGGA 92 consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 AAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGC 360 consensus_8932#1 AAGATGTACCCTGACCTGGAAGAGAAGAGCAGCAGCGCCCAGGCCACCGTCGTGCTCGGC 152 consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 GTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGC 420 consensus_8932#1 GTCGCGCCGGAGAAGGCGCACTTCGAGGCGGCCGCCGAGTCCGGCGAGACCGCCCACGGC 212 consensus_8932#2 ------------------------------------------------------------ consensus_8932#0 TGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTG 480 consensus_8932#1 TGCGGCTGCGGCTCCAGCTGCAAGTGCAACCCTTGCAACTGCTAAGAAGCCATTTATTTG 272 consensus_8932#2 ---------------------------------------------------------ACG 3 * consensus_8932#0 GCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCC 540 consensus_8932#1 GCTATTATCATCTGTGTGATCGTGTGTCCGTGCGTGTGATGAATGAATAATAAAGGAGCC 332 consensus_8932#2 CTGATGGACAATGGATTCACTGCATGTT-GAATGACCGACTG-CAACTGATGAAGGGAAT 61 ** ** * * * * *** * * ** * * ** **** consensus_8932#0 ATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCT 600 consensus_8932#1 ATATCTGCTCTGGCATATGCATAGTGCATATGCAGTTTGTGTGATCAATCTGCTGTTTCT 392 consensus_8932#2 GTTGGGCACCTGCGAGGNNCACAAAGAATTGCAGGCACAGAGGGGAAAGCACCTGTGCAT 121 * *** * ** * * ** * * ** * **** * consensus_8932#0 GTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTC-TGGTATATTAATTTACTGG 659 consensus_8932#1 GTCCCTGTGCTGATACGCACACGTAGCTCCTGAAACTGTC-TGGTATATTAATTTACTGG 451 consensus_8932#2 GCTGCCTTGTGCATGCTTGGAGTTGGCT--TGGAGCTGTGATGAGATTTGCAGACAAGAT 179 * * ** ** * * * *** ** * **** ** ** * * * consensus_8932#0 TGTGTTTGTGTGGGTGGGTGT-----GATCGTATCTGTATCATATCAAACCATGCATGTA 714 consensus_8932#1 TGTGTT-GTGTGGGNGGGGGGTGGGGAACCGAATCTGTATCATATCANACCATGCATGTA 510 consensus_8932#2 GGTGCT-GTGGCAGCTGGTGGGATGCAAGCTGGGGGCTGCGGCTGCAGAACTGGCACGTG 238 *** * *** * ** * * * * ** * * *** ** consensus_8932#0 TCTATCTAGTAC-CTATAGCTTGCTGGTTCACGNGCTGCTAAAAAAAAAAAAAAAAAAAA 773 consensus_8932#1 TCTATCTAGTAC-CTATAGCTTGCTGGTTCACGAGCTGNCANNNANANNNNNAANNNNNN 569 consensus_8932#2 GCGGAAAGATGTACCCTGACCTGGAAGAG-AAGAGCAGCAGCGCCCAGGCCACCGTCGTG 297 * * * * * ** * * * ** * * consensus_8932#0 TAAAAAAAAAAAAAAAAAAAAAAAA 798 consensus_8932#1 NNNNNNNNNNNNNNNNNNNNNN--- 591 consensus_8932#2 CTCGGCGTCGCGCCGGAGAAGGCG- 321 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||