These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTTTGCTGTTAAGAC] [+] EMBL AK073806 [GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAA ] [+] EMBL AK062340 [ GCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCTAGCGCCCACCGCCCGGCGCCCGCGCCACCGCTGGTCCACCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCACTACCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCAGCAGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGTTTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTTTGCTGTTAAGAC] consensusID : consensus_8933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CTCGGCTCCTCGCAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTATGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA] [+] EMBL CA999546 [CTCGGCTCCTCGCAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCGCCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTTCACCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGTCGCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTATGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGGATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGATGGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGAATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA] consensusID : consensus_8933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [AGCGGTGGCAGAGCATCACGCTCCACCCACCGCCAGCGCCCCGCGCCACCCCTGGTCCGCCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAGCCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTTCGCCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGACTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGGACTGATGTGTGTTGCTGTTTTGTGATGACTAATGATTGATGAA] [+] EMBL AK063659 [AGCGGTGGCAGAGCATCACGCTCCACCCACCGCCAGCGCCCCGCGCCACCCCTGGTCCGCCGTCCTCGGCTCCTCGCGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAGCCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTTCGCCGCCGCTACCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGACTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAGCCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTATGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGGACTGATGTGTGTTGCTGTTTTGTGATGACTAATGATTGATGAA] consensusID : consensus_8933#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CCAAGCTACGAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGGAAACCTCAAATGCAAGTAGCTGTTTTGTGATTGAACCAAGTACTGTACTGATGGANTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATGGNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075887 [CCAAGCTACGAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGGAAACCTCAAATGCAAGTAGCTGTTTTGTGATTGAACCAAGTACTGTACTGATGGANTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATGGNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATTTGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8933#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [NCANNCGCCAGCGCCCACCGCCCGGCGCCCGCNCCACCGCTTCTCTGCCGTCCTCTGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCGCCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCTCGCCGCCGCTACCACCACTGACGACGACGCTACAGCCACACCGACGAGC] [+] EMBL AU100902 [NCANNCGCCAGCGCCCACCGCCCGGCGCCCGCNCCACCGCTTCTCTGCCGTCCTCTGCTCCTCGCGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCGCCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCTCGCCGCCGCTACCACCACTGACGACGACGCTACAGCCACACCGACGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8933#2 ---------------------------------------AGCGGTGGCAGAGCATCACGC 21 consensus_8933#4 ---------------------------------------------------NCANNCGCC 9 consensus_8933#0 GGCATCGCGACTTTGCGAGACCGCAAGCCGGCGGTGGAGCATCGCGCTCCACCCACCGCT 60 consensus_8933#1 ------------------------------------------------------------ consensus_8933#3 ---------------------------------------------------CCAAGCTAC 9 consensus_8933#2 TCCACCCACCGCCAGCGCCCCGCG-----CCACCCCTGGTCCGCCGTCCTCGGCTCCTCG 76 consensus_8933#4 AGCGCCCACCGCCCGGCGCCCGCN-----CCACCGCTTCTCTGCCGTCCTCTGCTCCTCG 64 consensus_8933#0 AGCGCCCACCGCCCGGCGCCCGCG-----CCACCGCTGGTCCACCGTCCTCGGCTCCTCG 115 consensus_8933#1 ------------------------------------------------CTCGGCTCCTCG 12 consensus_8933#3 GAACCCGACGANCCTAAACCCATTGATTTTGATNCCTTTTGTGCTGTANATTTATGATGG 69 * * * consensus_8933#2 CGACCTCGCCCCCACCATCTTCGCTGTCTCGTACCGCCGCCATCTCGCGGCGCTGTCCAG 136 consensus_8933#4 CGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCTATCTTGCGGCGCTGTCCCG 124 consensus_8933#0 CGACCTCGCCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCG 175 consensus_8933#1 CAACCTCACCCCCACCGTCTTCGCCGTCTCGTACCGCCGCCATCTCGCGACGCTGTCCCG 72 consensus_8933#3 AAACCTCAAATGCAAG----TAGCTGTTTTGTGATTGAACCAAGT-ACTGTACTGATGGA 124 ***** ** * ** ** * ** * * * * *** consensus_8933#2 CCGTTTCGCGGCGCCGTCTCGCGGCGGCAGCGCCGTCCCGCCGTTT---CGCCGCCGCTA 193 consensus_8933#4 CCGTTTCGCGGCCCCGTCTCGCAGCCGCGGCGTCATNCCGCTGTCT---CGCCGCCGCTA 181 consensus_8933#0 CCGTTTCGCAGTGCCGTTTCGCGGCCGCGGCGCCGTCCCGCCGTTT---CACCGCCACTA 232 consensus_8933#1 CCGTTTCGCAGCGCCGTCTCGCGGCCGCGGCGCCGTCCCGCCGTTT---CACCGCCGCTA 129 consensus_8933#3 NTGATGTGTGCTGCTGTTGTGTGATGNCCGAAACAATTGATNANCTATGTACTGATGATG 184 * * * * ** * * * * * * * * consensus_8933#2 CCACCACTGACGACGACGCCACAGCCACACCGACGAGCCGACGACGCCTCGCCTCTGCGA 253 consensus_8933#4 CCACCACTGACGACGACGCTACAGCCACACCGACGAGC---------------------- 219 consensus_8933#0 CCACTACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGT 292 consensus_8933#1 CCACCACTGACGACGACGCCACAGCCACACCAAGGAGCCGACGACGCCTCGCCTCGCAGT 189 consensus_8933#3 GNGTGATAGCTCATAGCAGATTAGCNGTAGCTCATAGCNGATTAGCNCTATAGCACTGNA 244 * * * * *** * * *** consensus_8933#2 CTCGACAGCAGCCAGCAGCCCAGCGGCAGCAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 313 consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 CGCAGCAGCAGC-AGCAGCCCAGCGGCAATAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 351 consensus_8933#1 C---GCAGCAGCCAGCAGCCCAGCGGCAGTAGCCAACAGCCCAGCGGCAGCAGCCAGCAG 246 consensus_8933#3 TAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATATT 304 consensus_8933#2 CCCAGCGACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTA 373 consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 CCCAGCGACGAGCCGACGATCATAAACCATTGATTTGATTTCTTTTGTGCTGCAGATTTA 411 consensus_8933#1 CCCAGCTACGAGCCGACGAGCCTAAACCATTGATTTGATTTCTTTTGTGCTGTAGATTTA 306 consensus_8933#3 TGTTATGCNAATTATATGNAGTTATAGNAGAATATNTTTTGCTGTTGAGACGNTTTNTTA 364 consensus_8933#2 TGATGGAATCATCAAATGCAAGTAGCTATTTTGTGATTGAACTAAGTACTGTACTAATGG 433 consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 TGATGGAATCATCAAATGTAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGG 471 consensus_8933#1 TGATGGAATCATCAAATGCAAGTAGCTGTTTTGTGATTGATCCAAGTACTGTACTGATGG 366 consensus_8933#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 393 consensus_8933#2 ACTGATGTGTGTTGCTGTTTTGTGATGACT--AATGATTGATGAA--------------- 476 consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 ATTGATGTGTGTTGCTGTTCTGTGATGACCGAAACAATTGATGAACTATGTACTGATGAT 531 consensus_8933#1 ATTGATGTGTGCTGCTGTTGTGTGATGACCGAAACAATTGATGAACTATGTACTGATGAT 426 consensus_8933#3 ------------------------------------------------------------ consensus_8933#2 ------------------------------------------------------------ consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 GGAGTGATAGCTCATAGCAGATTAGCAGTATAGCACTGAATAATAGTGTATACTATATAT 591 consensus_8933#1 GGAGTGATAGCTCATAGCAGATTAGCAGTAGCTCATAGCAGATTAGCACTATAGCACTGA 486 consensus_8933#3 ------------------------------------------------------------ consensus_8933#2 ------------------------------------------------------------ consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 CTTATACAAGGGTGTTATGCAAATTATATGAAGGTATAGAAGAATATATTGCTGTTCTGT 651 consensus_8933#1 ATAATAGTGTATACTATATATCTTATACAAGGGTGTTTTGCTGTAATTTTTTTTAAATAT 546 consensus_8933#3 ------------------------------------------------------------ consensus_8933#2 ------------------------------------------------------------ consensus_8933#4 ------------------------------------------------------------ consensus_8933#0 TTTGCTGTAATTTTTTTAAAATATTTGTTATGCAAATTATATGAAGGTATAGAAGAATAT 711 consensus_8933#1 TTGTTATGCAAATTATATGAAGTTATAGAAGAATAAAAAAA------------------- 587 consensus_8933#3 ------------------------------------------------------------ consensus_8933#2 ---------------- consensus_8933#4 ---------------- consensus_8933#0 ATTTTGCTGTTAAGAC 727 consensus_8933#1 ---------------- consensus_8933#3 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||