These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 476 fasta sequence [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG-CCCTGAACTGGACTGCTGGACCGGTGGGCGA-CCTGAA--GCCTTGGTAGCATGCATC-TCACTGCCTATA-GAAATGT-AAAAAC-TTTTTT-GAAAAA-GATATATTTACAGACAT-GATATAT-AC-TTGCGGCTTGAGATCANCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTGGATCTTTTNCCTGATAAGTATATACNTATATCTTANTCCTTT] [+] EMBL OSR28781A [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG CCCTGAACTGGACTGCTGGACCGGTGGGCGA CCTGAA GCCTTGGTAGCATGCATC TCACTGCCTATA GAAATGT AAAAAC TTTTTT GAAAAA GATATATTTACAGACAT GATATAT AC TTGCGCCTTGAGATCANCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTGGATCTTTTNCCTGATAAGTATATACNTATATCTTANTCCTTT] [+] EMBL OSR3208A [ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGG CCCTGAACTGGACTGCTGGACCGGTGGGCGA CCTGAA GCCTTGGTAGCATGCATC TCACTGCCTATA GAAATGT AAAAACTTTTTTT GAAAAA GATATATTTACAGACAT GATATAT AC TTGCGGCTTGAGATCACCATGGTTGCA ] [+] EMBL OSR17101A [ TCCGAAGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCCTGAACTGGACTGCTGGACCGGTGGGCGACCCTGAAAGGCCTTGGTAGNATGCATCTTCACTGCCTATAGGAAATGTAAAAAAC TTTTTTGGAAAAAGGATATATTTACAGGCATGGATATATNACTTTGCGG ] consensusID : consensus_8937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [AAAAAAGCTTGCGGCCGCAAGCTTCCACATGGTGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGCATGCATCTCACTGCCTATAGAGATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGCTTGCGCCGCCCCGC] [-] EMBL OSA420714 [AAAAAAGCTTGCGGCCGCAAGCTTCCACATGGTGAAAACGTCTTCTTGAAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGGTAGCATGCATCTCACTGCCTATAGAGATGTAAAAACTTTTTTGAAAAAGATATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGCTTGCGCCGCCCCGC] [+] EMBL CA766482 [ TATATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATT ] consensusID : consensus_8937#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGAANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGCCCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATATATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGACATAAAAA] [+] EMBL AU032020 [GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGAANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGCCCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATATATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNATAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATCTTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATATATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGACATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8937#1 ------------------------------------------------------------ consensus_8937#2 ------------------------------------------------------------ consensus_8937#0 ATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAGCTGG 60 consensus_8937#1 ------------------------------------------------------------ consensus_8937#2 ------------------------------------------------------------ consensus_8937#0 ACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTCGCGA 120 consensus_8937#1 ------------------------------------------------------------ consensus_8937#2 ------------------------------------------------------------ consensus_8937#0 ACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCATTCC 180 consensus_8937#1 --------AAAAAAGCTTGCGGCCGCAAGCTTCC-ACATGGT-GAAAACGTCTTC-TTGA 49 consensus_8937#2 ------------------GCCTCGNCAAGNTTCCCACTTGGCCGAAAACNTCTTCCTTGA 42 consensus_8937#0 ATCAGATACTGAATGGTCTCGCTCGCAAGCTTCC-ACATGGC-GAAAACGTCTTC-TTGA 237 * **** **** ** *** ****** ***** **** consensus_8937#1 AGCCC-GGGGAGAGGGCCCTGAACT--GGACTGCTGGACC--GGTGGGCGACCTGAAG-- 102 consensus_8937#2 ANCCCCGGGGAGTGGNCCCTGNAACTGGNACTGCTGGANCCCGNTGNGCGCCCTGAANGC 102 consensus_8937#0 AGCCC-GGGGAGAGGGCCCTGAACT--GGACTGCTGGACC--GGTGGGCGACCTGAAG-- 290 * *** ****** ** ***** * * ********* * * ** *** ****** consensus_8937#1 CCTTGGTAGCATGCATCTCACTGCC-TATAGAGATGTAAAAACTTTTTTGAAAAAGATAT 161 consensus_8937#2 CCTTGGTAGCATGCATCTCACTGCCCTATAGAAATGTAAAAACTTTTTTGAAANAGATAT 162 consensus_8937#0 CCTTGGTAGCATGCATCTCACTGCC-TATAGAAATGTAAAAACTTTTTTGAAAAAGATAT 349 ************************* ****** ******************** ****** consensus_8937#1 ATTTACAGACATGATATATACTTGCGCCTTGAGATCACCATGGTTGCATAGTGCTGACCA 221 consensus_8937#2 ATTTACAGACATGNTATATACTTGCGCCTTGAGANCACCATGGTTGCATNGTGCTGACNA 222 consensus_8937#0 ATTTACAGACATGATATATACTTGCGGCTTGAGATCANCATGGTTGCATAGTGCTGACCA 409 ************* ************ ******* ** *********** ******** * consensus_8937#1 TAAATCAACAAATGTACATTGTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATC 281 consensus_8937#2 TAAATCAACAAATGTACATTTTTTTGTATCTTTTTCCCTGATAGCTATATACCATATATC 282 consensus_8937#0 TAAATCAACAAATGTACATT-TTTTGGATCTTTTNCC-TGATAAGTATATACN-TATATC 466 ******************** ***** ******* ** ***** ******* ****** consensus_8937#1 TTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTGTCCGCTTTGTCCATAT 341 consensus_8937#2 TTCATTCCTTTTCTTCCCATTAGCGGATGAAATGCCGGCATTTNTCCGCTTTGTCCATAT 342 consensus_8937#0 TT-ANTCCTTT------------------------------------------------- 476 ** * ****** consensus_8937#1 ATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCAAAAAAAAAAAAAAGC 401 consensus_8937#2 ATGTGGATAACTGGATATCATAATGAAATTATGAGATTTAATTCATGNTGAATGCGTGAC 402 consensus_8937#0 ------------------------------------------------------------ consensus_8937#1 TTGCGCCGCCCCGC 415 consensus_8937#2 ATAAAAA------- 409 consensus_8937#0 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||