These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 887 fasta sequence [AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC-TTTGTGAGGAAGCTAATATTCCT-TACATATA-TGTGCCATCAAAAGAGGATCTT-GCTACTGCCG-GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGT-CCCTGTCCC-AGGCCCAGATATGC-ATACCTGGGCACCCCAGATCAGAAAACTCACCAAAGTCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTCCAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA] [+] EMBL AK063054 [AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAGCTAATATTCCT TACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACT ] [+] EMBL D43343 [ CGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCG CCATCGCGAAG CTCTCGCCGNCAAGAAGCTCTNCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCNTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTTGTNAGGAAGCTAATATTCCT TACATATATTNTGCCATNAAAAGNGGNTCTTNGCTACTGNCGTGGACTACTAATAGGn ] [+] EMBL BP184724 [ CGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAGCTAATATTCCT TACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAG ] [+] EMBL BM037743 [ TCCTATCGATGTGATTACACATGTTCCAATAC TTTGTGAGGAAACTAATATTCCTGTACATATA TGTGCCATCAAAAGAGGATCTT GCTACTGCCG GGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGTCCCCTGTCCC AGGCCCAGATATGC ATACCTGGGCACCCCAGATCAGAAAACTCACCA ] [-] EMBL CF315218 [ AAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAGT CCCTGTCCCAAGGCCCAGATATGCAATACCTGGGCACCCCAGATCAGAAAACTCACCAAAGTCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTCCAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA] consensusID : consensus_8945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [AGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTGAGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGCAGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTACTGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT] [+] EMBL CF315217 [AGTCGGCGGCGGCGCGGCGATGGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAAGCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTGAGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGCAGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGAGGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAATACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTACTGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8945#0 AAAAACTCCAGAACCAACCAAAAGGCGCGCGAACACACGAGTCGGCGGCGGCGCGGCGAT 60 consensus_8945#1 ---------------------------------------AGTCGGCGGCGGCGCGGCGAT 21 ********************* consensus_8945#0 GGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAA 120 consensus_8945#1 GGGGAGCAACACGGAGGTGGAGAAGAAGAAGGCCCCAACGGCGCTCGCGCCCATCGCGAA 81 ************************************************************ consensus_8945#0 GCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAG------- 173 consensus_8945#1 GCCTCTCGCCGGCAAGAAGCTCTGCAAGCGAACCCTCAAGCTCGTCCGGCGAGGTTCCTG 141 ***************************************************** consensus_8945#0 ------------------------------------------------------------ consensus_8945#1 AGAGACTTTTTTTTTTTAATTTCGGGCCGCCAAATTCCAATCCCTGTTGGTTTCTTTTGC 201 consensus_8945#0 -----------------------------------------------------CATCGGA 180 consensus_8945#1 AGTTTAAGGTTTTTTTATCATGCTTTTGGTCGTTCCTATGTTTTCTTTCCCAGCATCGGA 261 ******* consensus_8945#0 GGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAA 240 consensus_8945#1 GGCCAAGTGCCTGAAGCGGGGAGTCAAGGAGGTGGTCAAGAGCATCCGTCGTGGGAACAA 321 ************************************************************ consensus_8945#0 AGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAAT 300 consensus_8945#1 AGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTTCCAAT 381 ************************************************************ consensus_8945#0 ACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTAC 360 consensus_8945#1 ACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTAC 441 ************************************************************ consensus_8945#0 TGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGG 420 consensus_8945#1 TGCCGGGACTACTAAGAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGG 501 ************************************************************ consensus_8945#0 GGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGA 480 consensus_8945#1 GGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGTCAGACTACGACCATGTTGTAGCTGA 561 ************************************************************ consensus_8945#0 AGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTA 540 consensus_8945#1 AGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCATAGTA 621 ************************************************************ consensus_8945#0 AATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGA 600 consensus_8945#1 AATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACAT--------------------- 660 *************************************** consensus_8945#0 ACATGAAGGTTGCTCTACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAG 660 consensus_8945#1 ------------------------------------------------------------ consensus_8945#0 CATAAGCTAGTCAATTGTAATGAAACCTGGTGAGCTGATCATTTACTCTCCAGTAAGAAG 720 consensus_8945#1 ------------------------------------------------------------ consensus_8945#0 TCCCTGTCCCAGGCCCAGATATGCATACCTGGGCACCCCAGATCAGAAAACTCACCAAAG 780 consensus_8945#1 ------------------------------------------------------------ consensus_8945#0 TCATGAGGTATTGTGTGTTAAGTTGCTCGTGGTTATGTTCATATCCTGTATCCATTTTTC 840 consensus_8945#1 ------------------------------------------------------------ consensus_8945#0 CAATTGGTCGATCCTGAAAAATGCGGCAAAAGATTCTTGTTAAAAAA 887 consensus_8945#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||