cluster # 8956

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Oryza sativa
cluster # 8956 cluster # 8956 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8956#0 length = 881 sequences # 2

consensus_8956#1 length = 594 sequences # 4

consensusID : consensus_8956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 881
fasta sequence

                              [TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACATTTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCCAAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTAGGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCGAAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGAACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTCAGAACAGCGATGGCGAGGTCCGCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACTGAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCGACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTCCCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA]

[+] EMBL CF313726             [TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACATTTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCCAAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTAGGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCGAAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF313727             [                                                                                                                                                                                                                                                                                                        CACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGAACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTCAGAACAGCGATGGCGAGGTCCGCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACTGAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCGACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTCCCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA]




>consensus_8956#0
TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACAT
TTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCC
AAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTA
GGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCG
AAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACC
GCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTG
GAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGT
CTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGAAGG
GCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGCA
TCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGAACA
GCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTCAGAACAGCGATGGCGAGGTCCGCGT
TCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACTGAGA
GGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCGACGG
TTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTCCCTC
TCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA

consensusID : consensus_8956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 594
fasta sequence

                              [CCGCGAAGACATCTCANGTATGTAATGTGCTTTTGCCCTCTTTTACGATGTACTAAACGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC]

[-] EMBL CB638964             [CCGCGAAGACATCTCANGTATGTAATGTGCTTTTGCCCTCTTTTACGATGTACTAAACGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCT ]
[-] EMBL CB638963             [                                                         CGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCCTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC]
[-] EMBL CB637207             [                                                                                                 CGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCT ]
[-] EMBL CB639272             [                                                                                                                                                       GGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCCTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCA         ]




>consensus_8956#1
CCGCGAAGACATCTCANGTATGTAATGTGCTTTTGCCCTCTTTTACGATGTACTAAACGG
GTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCG
AGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACT
CCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGC
TCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATC
TTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCG
ACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTC
CGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGG
AGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTC
GTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8956#0      TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACAT 60
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      TTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCC 120
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTA 180
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      GGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCG 240
consensus_8956#1      --------------------------------------------------------CCGC 4
                                                                              *   

consensus_8956#0      AAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACC 300
consensus_8956#1      GAAGAC---ATCTCANGTAT-GTAATGTGCTTTTGCCCTCTTTTACGATG-TACTAAACG 59
                       *****    *** *    * ****   *    ** *  *   **      * **  ** 

consensus_8956#0      GCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGA-ACAGCGGT--GACA 357
consensus_8956#1      GGTGGAAATGCCTTTTGGGCTTTGGCTCAGC----GATGGCTCGGCACGGTGGCCAGGCA 115
                      * *  * *     *    ****   * * **      ***** *  ** * **   * **

consensus_8956#0      GTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCC 417
consensus_8956#1      GCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCC 175
                      * *      * ********************** ** *** *** ****** *** ****

consensus_8956#0      GGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGA 477
consensus_8956#1      GGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGA 235
                      ** ********************************** * ********************

consensus_8956#0      AGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTG 537
consensus_8956#1      AGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTG 295
                      ************************************************************

consensus_8956#0      GCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGA 597
consensus_8956#1      GGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATT-GACGGGA 354
                      * ********** ************* *  ***** * ************** *******

consensus_8956#0      ACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTC-AGAACAGCGATGGCGAGGTCC 656
consensus_8956#1      ACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCC 414
                      ** *** *** ***************** ********* ******** ** ** ******

consensus_8956#0      GCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACT 716
consensus_8956#1      GTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACT 474
                      * ***** *** *** ***************************** ******* ** ***

consensus_8956#0      GAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCG 776
consensus_8956#1      GAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCG 534
                      ************************** ********************* ***********

consensus_8956#0      ACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC 836
consensus_8956#1      ACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC 594
                      ***** ******************************************************

consensus_8956#0      CCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA 881
consensus_8956#1      ---------------------------------------------