These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1880 fasta sequence [TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCGGAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGAAGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGCGGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCTCGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGGATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGATTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAATTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGGACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGTTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAGAATTCC] [+] EMBL CB666025 [TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGA ] [+] EMBL CB666027 [ ATCATCAAAAATTTGTCCACTATGTCTCTTCTCGAAATTCTGTACTAGATGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACTGCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAACCTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACTGGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTTCCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCAACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAG ] [-] EMBL CB666026 [ CAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTT ] [-] EMBL CB666024 [ TAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACACCGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCACAGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGCACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTGGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGTTTAGGGGATGTT ] [-] EMBL CB648272 [ CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCGGAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGAAGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGCGGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCTCGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGGATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGATTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAATTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGGACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGTTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAGAATTCC] consensusID : consensus_8958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC] [+] EMBL CB648273 [TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGGTGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATACAGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCTAAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGCTCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAAAACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCGTATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTCCACCTACAGCCCACATTCTTGCCACTGCAATACACCCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACTTCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAGACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCGCGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCGATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8958#0 TCTTTTTATTGATCATCAAAAATTTGTCCACTATGTCTCTTCCCGAAATTCTGTACTAGA 60 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 TGGTACATACACTCTCTATGTTTAGCATATGAAAAAACCACACTCACCCCATACATCACT 120 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 GCTTGCCCACAATCAGTGCTGAATGTAAGCCCAACTGGGTTGCCTATAGCTTCTTTCAAC 180 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 CTATTCATAAACCACTCCCAATTCTCATTTGTTTCTGAGTCAATGACACCAATAGCTACT 240 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 GGGTACATCCAATTGTGACCATCAACTGCACAAGCTACACACAACCGGCCCCTGAACCTT 300 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 CCATTTAAAAATGTACTATCTACTGCAAGATATGGCCTACAACCTCATAGGAAACCATCA 360 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 ACACAAGCTTTCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGG 420 consensus_8958#1 ----------TCAAAGCAAAAAACAGCCTATTAAACCTTATTTTGTTGTTGATGGTATGG 50 ************************************************** consensus_8958#0 TGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATAC 480 consensus_8958#1 TGATCAATTACAACAAAGGATCCAGGATTAGTATCCTCTATCTGAGCCTTAAATCTATAC 110 ************************************************************ consensus_8958#0 AGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCT 540 consensus_8958#1 AGGTTGTCAAAACTGCAGGACCAAGGACCATAAAGTTTATCCATAGCACGTTGCCTACCT 170 ************************************************************ consensus_8958#0 AGATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGC 600 consensus_8958#1 AAATAAACTTTCCTGTAGGTTACCTCAACTTTGTGGCTCTCCTTCAACCTCCTCCTCAGC 230 * ********************************************************** consensus_8958#0 TATTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAA 660 consensus_8958#1 TCTTTGGCACCCAATGTTTCATCTTCCTTCAACCAATCAAGCACTTGTTCACAGACCCAA 290 * ********************************************************** consensus_8958#0 AACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCG 720 consensus_8958#1 AACTGTGTCACTCCTACACAAGTGCCTGCCCTCCTAGTGCTTTGACAATTCTCATGATCG 350 ************************************************************ consensus_8958#0 TATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTC 780 consensus_8958#1 TATGGGTTCCTTGTGATCTTCACTATGACTTGATCACTCAAAAGAGTGGTATGAATTCTC 410 ************************************************************ consensus_8958#0 CACCTACAGCCCACATTCTTGCCACTGCAATACACCAGAAGAGGCACTTAATCCTCACAC 840 consensus_8958#1 CACCTACAGCCCACATTCTTGCCACTGCAATACACC------------------------ 446 ************************************ consensus_8958#0 CGAAAAGAAAGCAGCAGCAGCAGAAAAGACGATCCTAGCAGGGCTTCAGCTCCACTCCAC 900 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 AGGCAAAACTCAACTGGGGTCTGAGCCTTGGTCTTCTAACTTCGCCTCCAGCTCAGAAGC 960 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 ACTACACTTCTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACT 1020 consensus_8958#1 ---------CTTGCTTCTTCAAAACAATCTTCCGAACTCTTTTCCTCGCGACCGCGAACT 497 *************************************************** consensus_8958#0 TCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAG 1080 consensus_8958#1 TCCGAAACGACGGATCCGTGGGCTAACGACGGAAGAGGGCGGCCGGTGGCGATCGGAAAG 557 ************************************************************ consensus_8958#0 ACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCG 1140 consensus_8958#1 ACTCCTCAGCGGCGAGCGGCACACGGGAAATGGCGGACGGACTTCGCCTCGACCAGTGCG 617 ************************************************************ consensus_8958#0 CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCG 1200 consensus_8958#1 CGAGGGGAGTGGAACTCTGGCGGAATTCCGGCGAAGAGGGGCGGCGACCGAGGAGCGGCG 677 ************************************************************ consensus_8958#0 ATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGCGGCGGCCG 1260 consensus_8958#1 ATGTTGGGGACAGCCACGGCGCGGCCCGGAGTGGTTGGGAACAGTGGCAAGC-------- 729 **************************************************** consensus_8958#0 GAGGTGGCAAAACAGTGGCGGCCTCGATCTTGATGGTGGGAATGGTGCTGCGGGGGTGGA 1320 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 AGGGGAGAACGGAGTGGATGCCGGGGCGCGGCACGACGCGGCGGAGCTTTTGGCGGCGGC 1380 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 GGCGCAGCGCGGCAGCGACGGGAGCGGCGGGAAACGGCGGCGAGCGGCGGAGCGCGGGCT 1440 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 CGCGCGGGGAGTACGGGAGAGGGTGTGAGGGACTCGGGGAGGAGGGGGAAACGGAAGAGG 1500 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 ATTGCCCGGGGAAGGTTTATATAGCTCCGGGAGGAGGAAATCGTGGCCGGGCGGGGAGGA 1560 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 TTTGAAGGAGGAATGGGCACCAGTGACGTGGGCGAGGTGGAGCTCGAATAGGCGCGAAAA 1620 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 TTTGGGGAAAAATGGGGGACGGGGTGGAGGAGTGGGCGGCGACCACGTCCGCACGGTCGG 1680 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 ACGTGCGCGCGGGAGGCTGGAGGCGGCGGTTTTAGCGGCGTAGTGGGCGGCAATGGCGGT 1740 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 TGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAG 1800 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 AAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTT 1860 consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 CGCCCATTGCGGAGAATTCC 1880 consensus_8958#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||