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Oryza sativa
cluster # 8960 cluster # 8960       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8960#0 length = 2131 sequences # 1  
consensus_8960#1 length = 833 sequences # 4  
consensus_8960#2 length = 824 sequences # 1  

consensusID : consensus_8960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2131
fasta sequence
                              [TTTCCCATGGTAGGATACTTCCACCCAGCTTCCCTCCTCTCACCCTTATATAAAGTTCTTGCTGCTGTGACTCTGCTTTGCTTGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGTTAGTTTCAACTCTCCTCTTGCCTTCCTTCCTTTTGGTTTCAGCGTTTGCTGAGATTGTTGTTCGTTTGCATTTCTTGGTTATAGCTGTGATGATTTTGGAAGCAATGTTAGGAGTTTCAGAGTAATTGGTCTTGGGGAATCTTGTTTTGTTGTTTATGTCAACTGTTGATGATAGGAGGATAGAGCATGGAGGGAGAAAAGTAAAGGGTTCTTGTCTGAACTGTTCAACTTGTCGCTTAGAACTTTCTATTGCATCCTACTTGCTGAGACATTTTTTTCCTCGAAAACTCCTCGGTGTAAAGAAGGCTGACCTTATCTGAATCGTTACTTTTTTTCAATAATGATCTAAATCATTTAGATGGTTCAGGAATTTTTTATATATATGTATTACATCTTGTTTTAATTTGTGTGCTGGAGCTGTAGATGGAATTGGAATTTCTGTGTTCTTAGGAAACGTTTCCCTGAAGTTTCTACGCTGCCCAATGACAGGGATTTGCTTGCTGCACGACTAGTTTGAGAGCTTCCTTTGGTCAAAGAATCATTCAGTTTGTGACAGAAAGGTGCTTGTTATTGGCTCACTCGTTTTCTTGACTAGTGAGGGCCCTTTAATCTTTGCAATGTGTAACCTACCTAATTTGTTTAGAAAAAGTTGTTGAGACATGCTTATCTAGTGGTCAAGTTCCTTAAGTAATCCGTAATATGTCCTCCAAAACTGCTTTTCTGATATTTGTGCTACCACTACTTGCCATTAACTCTATGATATACACATAGTTATTATTAAATAGTAGTTAAACCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGACCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTATGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAGTTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATATCCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGTGAAGCTTGAACTTTGATGGATACTTTAATTTGATGATCTACAGTATCTGTTTCCCCTTTGCCAAACTAGATTTCCAATATCTGTCTCTGCAATTGCATTCCATGCGTATCGCAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGGTGGTTTAGTACCTCAAGCAGTTCAGACCATTAATTTTCAAGCTGTTATCCATCATTTCTGACCATGTTCTTGTTCATGTGTGCAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATTGACATATACTTAG]

[+] EMBL AK069620             [TTTCCCATGGTAGGATACTTCCACCCAGCTTCCCTCCTCTCACCCTTATATAAAGTTCTTGCTGCTGTGACTCTGCTTTGCTTGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGTTAGTTTCAACTCTCCTCTTGCCTTCCTTCCTTTTGGTTTCAGCGTTTGCTGAGATTGTTGTTCGTTTGCATTTCTTGGTTATAGCTGTGATGATTTTGGAAGCAATGTTAGGAGTTTCAGAGTAATTGGTCTTGGGGAATCTTGTTTTGTTGTTTATGTCAACTGTTGATGATAGGAGGATAGAGCATGGAGGGAGAAAAGTAAAGGGTTCTTGTCTGAACTGTTCAACTTGTCGCTTAGAACTTTCTATTGCATCCTACTTGCTGAGACATTTTTTTCCTCGAAAACTCCTCGGTGTAAAGAAGGCTGACCTTATCTGAATCGTTACTTTTTTTCAATAATGATCTAAATCATTTAGATGGTTCAGGAATTTTTTATATATATGTATTACATCTTGTTTTAATTTGTGTGCTGGAGCTGTAGATGGAATTGGAATTTCTGTGTTCTTAGGAAACGTTTCCCTGAAGTTTCTACGCTGCCCAATGACAGGGATTTGCTTGCTGCACGACTAGTTTGAGAGCTTCCTTTGGTCAAAGAATCATTCAGTTTGTGACAGAAAGGTGCTTGTTATTGGCTCACTCGTTTTCTTGACTAGTGAGGGCCCTTTAATCTTTGCAATGTGTAACCTACCTAATTTGTTTAGAAAAAGTTGTTGAGACATGCTTATCTAGTGGTCAAGTTCCTTAAGTAATCCGTAATATGTCCTCCAAAACTGCTTTTCTGATATTTGTGCTACCACTACTTGCCATTAACTCTATGATATACACATAGTTATTATTAAATAGTAGTTAAACCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGACCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTATGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAGTTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATATCCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGTGAAGCTTGAACTTTGATGGATACTTTAATTTGATGATCTACAGTATCTGTTTCCCCTTTGCCAAACTAGATTTCCAATATCTGTCTCTGCAATTGCATTCCATGCGTATCGCAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGGTGGTTTAGTACCTCAAGCAGTTCAGACCATTAATTTTCAAGCTGTTATCCATCATTTCTGACCATGTTCTTGTTCATGTGTGCAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATTGACATATACTTAG]


>consensus_8960#0 TTTCCCATGGTAGGATACTTCCACCCAGCTTCCCTCCTCTCACCCTTATATAAAGTTCTT GCTGCTGTGACTCTGCTTTGCTTGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCC TGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGA CGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATG GTTAGTTTCAACTCTCCTCTTGCCTTCCTTCCTTTTGGTTTCAGCGTTTGCTGAGATTGT TGTTCGTTTGCATTTCTTGGTTATAGCTGTGATGATTTTGGAAGCAATGTTAGGAGTTTC AGAGTAATTGGTCTTGGGGAATCTTGTTTTGTTGTTTATGTCAACTGTTGATGATAGGAG GATAGAGCATGGAGGGAGAAAAGTAAAGGGTTCTTGTCTGAACTGTTCAACTTGTCGCTT AGAACTTTCTATTGCATCCTACTTGCTGAGACATTTTTTTCCTCGAAAACTCCTCGGTGT AAAGAAGGCTGACCTTATCTGAATCGTTACTTTTTTTCAATAATGATCTAAATCATTTAG ATGGTTCAGGAATTTTTTATATATATGTATTACATCTTGTTTTAATTTGTGTGCTGGAGC TGTAGATGGAATTGGAATTTCTGTGTTCTTAGGAAACGTTTCCCTGAAGTTTCTACGCTG CCCAATGACAGGGATTTGCTTGCTGCACGACTAGTTTGAGAGCTTCCTTTGGTCAAAGAA TCATTCAGTTTGTGACAGAAAGGTGCTTGTTATTGGCTCACTCGTTTTCTTGACTAGTGA GGGCCCTTTAATCTTTGCAATGTGTAACCTACCTAATTTGTTTAGAAAAAGTTGTTGAGA CATGCTTATCTAGTGGTCAAGTTCCTTAAGTAATCCGTAATATGTCCTCCAAAACTGCTT TTCTGATATTTGTGCTACCACTACTTGCCATTAACTCTATGATATACACATAGTTATTAT TAAATAGTAGTTAAACCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGA CCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTA TGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAG TTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATAT CCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAG AGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACA TGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCC TCATTGCCAGGAAGATGAAGGTGAAGCTTGAACTTTGATGGATACTTTAATTTGATGATC TACAGTATCTGTTTCCCCTTTGCCAAACTAGATTTCCAATATCTGTCTCTGCAATTGCAT TCCATGCGTATCGCAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCT AGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGGTGGTTTAGTACCTCAAGCAGTT CAGACCATTAATTTTCAAGCTGTTATCCATCATTTCTGACCATGTTCTTGTTCATGTGTG CAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAG ATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATA ATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAA GTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTC AATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAG ATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCG AACTATGTATTAGAAATTGACATATACTTAG



consensusID : consensus_8960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 833
fasta sequence
                              [GAGTAGAAAGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATTGACATATACTTAGAAGGGCGTCTATCCATGTTTTTTATTTTTTTTTGGGAATT]

[+] EMBL CF279320             [GAGTAGAAAGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK067697             [                  CCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGGTGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATTGACATATACTTAGAAGGGCGTCTATCCATGTTTTTTATTTTTTTTTGGGAATT]
[-] EMBL CB664251             [                        TACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGA                                                                                                                            ]
[+] EMBL CB664250             [                                CCTCTGTGTTTTCCTGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTG                                                                                                                             ]


>consensus_8960#1 GAGTAGAAAGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCCTGCACTCTCCTTGC TAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGACGAGCGAGCAGATG GTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATGGATGCATCACCTTG GAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAAC GACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTG AGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTC GAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATG ACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGAT ACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAA CGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCC CAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACC ACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACTAT ACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTTGCGAACTATGTATTAGAAATT GACATATACTTAGAAGGGCGTCTATCCATGTTTTTTATTTTTTTTTGGGAATT



consensusID : consensus_8960#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 824
fasta sequence
                              [TAAACCCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGACCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTATGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAGTTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATATCCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACT]

[-] EMBL CB666748             [TAAACCCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGACCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTATGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAGTTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATATCCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACT]


>consensus_8960#2 TAAACCCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGACCGTGTTTTG CACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTATGTGCTAGTA AGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAGTTACACAACA ATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATATCCTAATTGAC ATTTGATATTGGAACCTTTGTCATATATGTAGGATGCATCACCTTGGAAGAGCTGGCTGC GGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACGACATGATGAGGGA AGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAG GAAGATGAAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAA GGATCAGAATGGTTTTATCTCCCCAACTGAGCTGAGGACAGTGATGACCAATCTTGGGGA GAAGATGACAGACGAGGAGGTTGAGCAGATGATAAGGGAGGCGGATACCGATGGCGACGG GCAGGTGAACTACGATGAATTTGTGATAATGATGAAAAACGCTGAACGGAAGATATCTGG GTGAAAAGATGCCGTTCATAGATCATAAGTGTGAACCACTGATCCCCAAATTTGGGAGCA TCTTTTCCACTGTAAATTCCATTCTCTCAATTACTGTATTTGAACCACAAAATTTGGACT TCAGCTATGGGTAATTGCAGCTTGTAAGATTGTGATTTAAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8960#0      TTTCCCATGGTAGGATACTTCCACCCAGCTTCCCTCCTCTCACCCTTATATAAAGTTCTT 60
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GCTGCTGTGACTCTGCTTTGCTTGCTTCTTCACCCAACTACCACCACCTCTGTGTTTTCC 120
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TGCACTCTCCTTGCTAGTGGTGTGACTGTGAAGGTGGCGGAGCCTGCATGGAAGGGCTGA 180
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CGAGCGAGCAGATGGTGGCGTTCCAGGAGGCGTTCTTGCTCTTCGACAAGAACGGCGATG 240
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GTTAGTTTCAACTCTCCTCTTGCCTTCCTTCCTTTTGGTTTCAGCGTTTGCTGAGATTGT 300
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TGTTCGTTTGCATTTCTTGGTTATAGCTGTGATGATTTTGGAAGCAATGTTAGGAGTTTC 360
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      AGAGTAATTGGTCTTGGGGAATCTTGTTTTGTTGTTTATGTCAACTGTTGATGATAGGAG 420
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GATAGAGCATGGAGGGAGAAAAGTAAAGGGTTCTTGTCTGAACTGTTCAACTTGTCGCTT 480
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      AGAACTTTCTATTGCATCCTACTTGCTGAGACATTTTTTTCCTCGAAAACTCCTCGGTGT 540
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      AAAGAAGGCTGACCTTATCTGAATCGTTACTTTTTTTCAATAATGATCTAAATCATTTAG 600
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      ATGGTTCAGGAATTTTTTATATATATGTATTACATCTTGTTTTAATTTGTGTGCTGGAGC 660
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TGTAGATGGAATTGGAATTTCTGTGTTCTTAGGAAACGTTTCCCTGAAGTTTCTACGCTG 720
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CCCAATGACAGGGATTTGCTTGCTGCACGACTAGTTTGAGAGCTTCCTTTGGTCAAAGAA 780
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TCATTCAGTTTGTGACAGAAAGGTGCTTGTTATTGGCTCACTCGTTTTCTTGACTAGTGA 840
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GGGCCCTTTAATCTTTGCAATGTGTAACCTACCTAATTTGTTTAGAAAAAGTTGTTGAGA 900
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CATGCTTATCTAGTGGTCAAGTTCCTTAAGTAATCCGTAATATGTCCTCCAAAACTGCTT 960
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TTCTGATATTTGTGCTACCACTACTTGCCATTAACTCTATGATATACACATAGTTATTAT 1020
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      TAAATAGTAGTTAAACCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGA 1080
consensus_8960#2      ----------TAAACCCATTCATTGGCCCTTGACGTCTCTATCTTGGTCAATGATTCTGA 50
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTA 1140
consensus_8960#2      CCGTGTTTTGCACATGGTGTGGTCTTGGTCTTCGTTTTGGATATGCACAAAAACCTACTA 110
consensus_8960#1      --------------------------------------------GAGTAGAAAGCTTCTT 16
                                                                  *   * *** ** ** 

consensus_8960#0      TGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAG 1200
consensus_8960#2      TGTGCTAGTAAGCAAATAGCAATAGCATTGGAGGCATGTTTTCACGGCTATTATCTTCAG 170
consensus_8960#1      CACCCAACTA--CCACCACCTCTGTGTTTTCCTGCA--CTCTCCTTGCTAGTGGTGTGAC 72
                          * * **  * *  * *  *    **    ***   * **   **** *    * * 

consensus_8960#0      TTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATAT 1260
consensus_8960#2      TTACACAACAATGAAATCCTGCTAATATTTACAGCCTTCAGGTCTATGCGTCTATGATAT 230
consensus_8960#1      TGTGAAGGTGGCGGAG-CCTGC----ATGGAAGGGCTGACGAGCGAGCAGATGGTGGCGT 127
                      *   *       * *  *****    **  *  * **   *  * *   *    **   *

consensus_8960#0      CCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAG---GATGCATCACCTTGG 1317
consensus_8960#2      CCTAATTGACATTTGATATTGGAACCTTTGTCATATATGTAG---GATGCATCACCTTGG 287
consensus_8960#1      TCCAGGAGGCGTTC----TTGC--TCTTCGACAAGAACGGCGATGGATGCATCACCTTGG 181
                       * *   * * **     ***    *** * **   * *  *   ***************

consensus_8960#0      AAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACG 1377
consensus_8960#2      AAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACG 347
consensus_8960#1      AAGAGCTGGCTGCGGTGACTCGTTCTCTTGGCCTTGAGCCGACCGATCAGGAGCTCAACG 241
                      ************************************************************

consensus_8960#0      ACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGA 1437
consensus_8960#2      ACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGA 407
consensus_8960#1      ACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGA 301
                      ************************************************************

consensus_8960#0      GCCTCATTGCCAGGAAGATGAAGGTGAAGCTTGAACTTTGATGGATACTTTAATTTGATG 1497
consensus_8960#2      GCCTCATTGCCAGGAAGATGAAGG------------------------------------ 431
consensus_8960#1      GCCTCATTGCCAGGAAGATGAAGG------------------------------------ 325
                      ************************                                    

consensus_8960#0      ATCTACAGTATCTGTTTCCCCTTTGCCAAACTAGATTTCCAATATCTGTCTCTGCAATTG 1557
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      CATTCCATGCGTATCGCAGGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGT 1617
consensus_8960#2      --------------------ATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGT 471
consensus_8960#1      --------------------ATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGT 365
                                          ****************************************

consensus_8960#0      CCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAGGTGGTTTAGTACCTCAAGCA 1677
consensus_8960#2      CCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAG-------------------- 511
consensus_8960#1      CCTAGACAAGGATCAGAATGGTTTTATCTCCCCAACTGAG-------------------- 405
                      ****************************************                    

consensus_8960#0      GTTCAGACCATTAATTTTCAAGCTGTTATCCATCATTTCTGACCATGTTCTTGTTCATGT 1737
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      ------------------------------------------------------------
                                                                                  

consensus_8960#0      GTGCAGCTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAG 1797
consensus_8960#2      ------CTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAG 565
consensus_8960#1      ------CTGAGGACAGTGATGACCAATCTTGGGGAGAAGATGACAGACGAGGAGGTTGAG 459
                            ******************************************************

consensus_8960#0      CAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTG 1857
consensus_8960#2      CAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTG 625
consensus_8960#1      CAGATGATAAGGGAGGCGGATACCGATGGCGACGGGCAGGTGAACTACGATGAATTTGTG 519
                      ************************************************************

consensus_8960#0      ATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCA 1917
consensus_8960#2      ATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCA 685
consensus_8960#1      ATAATGATGAAAAACGCTGAACGGAAGATATCTGGGTGAAAAGATGCCGTTCATAGATCA 579
                      ************************************************************

consensus_8960#0      TAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCT 1977
consensus_8960#2      TAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCT 745
consensus_8960#1      TAAGTGTGAACCACTGATCCCCAAATTTGGGAGCATCTTTTCCACTGTAAATTCCATTCT 639
                      ************************************************************

consensus_8960#0      CTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGT 2037
consensus_8960#2      CTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGT 805
consensus_8960#1      CTCAATTACTGTATTTGAACCACAAAATTTGGACTTCAGCTATGGGTAATTGCAGCTTGT 699
                      ************************************************************

consensus_8960#0      AAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTT 2097
consensus_8960#2      AAGATTGTGATTTAAAACT----------------------------------------- 824
consensus_8960#1      AAGATTGTGATTTAAAACTATACTAAGGTTGTGGTTTTATTTCAAAAGTTGTTCGCTTTT 759
                      *******************                                         

consensus_8960#0      GCGAACTATGTATTAGAAATTGACATATACTTAG-------------------------- 2131
consensus_8960#2      ------------------------------------------------------------
consensus_8960#1      GCGAACTATGTATTAGAAATTGACATATACTTAGAAGGGCGTCTATCCATGTTTTTTATT 819
                                                                                  

consensus_8960#0      --------------
consensus_8960#2      --------------
consensus_8960#1      TTTTTTTGGGAATT 833
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)