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Oryza sativa
cluster # 8973 cluster # 8973       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8973#0 length = 2346 sequences # 5  
consensus_8973#1 length = 375 sequences # 1  

consensusID : consensus_8973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2346
fasta sequence
                              [CTTGCTCTCTCTCCCATCGCTTTCCCCTCCCCTCGCTTGCCGCCGCATCCATCCACCACCTCTCCCCCTCGCGGATGCGATTCCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGACTAGCTAGCTAGCTCGGAGGTCGGAGGGGAGGGGTGGTACGACTACAATGGCGAGCGCGTCGGAGGACGACGCCGGCTCGGAGCGGTGCTGCGGGAGCTACAGCCCGAGCGCGGACGTCAGCGAGTCGGAGACATCCAGCGACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCTTCGCCTCCTCCTCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCCCTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCGAGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGAGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTCCGCCACTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGCTTCGGCG-AGGAAGGCGATGTGGACGAGGGAGATGGACTGGCTGCTCTCCGTGGCCGACTCCATCGTCGAGCTCACCCCGTCAATCCAGGAGCTCCCCGACGGCGGGGGACAGTTCGAGGTCATGGTGCCGCGCCCCCGCAGCGACCTCTACATGAACCTCCCGGCGCTCAAGAAGCTCGATGCGATGCTCCTCGCCATGATTGACGGGTTCAAGGAGACCGAGTTCTGGTATGTGGATAGGGGGATCGTGGTTGATGACAGCGGCGGGCCGTTCTCGTCGTCGTCATCCTCCTGCGGGCGGCCGTCGGTGCGGCAGGAGGAGAAATGGTGGCTGCCATGCCCGCGGGTGCCGCCCAAGGGGTTGTCAGAGGATGCGAGGAGGAAGCTGCAACAGGACAGGGATTGTGCGAACCAGATACTGAAGGCGGCCATGGCGATTAACAGCGATGTGCTCGCGGAGATGGAGATCCCGGAAGTGTACTTGGAGTCACTGCCAAAGAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAACACCACACACTTGAAGTAGCTAACAGAATAGAGGCTGCCATCCATGTGTGGAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAGCAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGAGTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTGGTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGTCCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATT-GCCAGAATTGATGATGTAATTTATGTAGATGATGCAA-CAAAGAAGTCTGCCGCTGCTGACTCTGTTTCCATCTTCAAT-CGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCTCAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACT-CCAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAAAACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATGCCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAGTGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACATCCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTC--TTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTGCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTATATGGCACCTAATGGACAGATCTGACGCTCTTCAGTGACTCTGAAGACTTTCTTATATCAACTGTGAATCTGTGATCGATC]

[+] EMBL AK105420             [CTTGCTCTCTCTCCCATCGCTTTCCCCTCCCCTCGCTTGCCGCCGCATCCATCCACCACCTCTCCCCCTCGCGGATGCGATTCCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGACTAGCTAGCTAGCTCGGAGGTCGGAGGGGAGGGGTGGTACGACTACAATGGCGAGCGCGTCGGAGGACGACGCCGGCTCGGAGCGGTGCTGCGGGAGCTACAGCCCGAGCGCGGACGTCAGCGAGTCGGAGACATCCAGCGACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCTTCGCCTCCTCCTCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCCCTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCGAGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGAGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTCCGCCACTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGCTTCGGCG AGGAAGGCGATGTGGACGAGGGAGATGGACTGGCTGCTCTCCGTGGCCGACTCCATCGTCGAGCTCACCCCGTCAATCCAGGAGCTCCCCGACGGCGGGGGACAGTTCGAGGTCATGGTGCCGCGCCCCCGCAGCGACCTCTACATGAACCTCCCGGCGCTCAAGAAGCTCGATGCGATGCTCCTCGCCATGATTGACGGGTTCAAGGAGACCGAGTTCTGGTATGTGGATAGGGGGATCGTGGTTGATGACAGCGGCGGGCCGTTCTCGTCGTCGTCATCCTCCTGCGGGCGGCCGTCGGTGCGGCAGGAGGAGAAATGGTGGCTGCCATGCCCGCGGGTGCCGCCCAAGGGGTTGTCAGAGGATGCGAGGAGGAAGCTGCAACAGGACAGGGATTGTGCGAACCAGATACTGAAGGCGGCCATGGCGATTAACAGCGATGTGCTCGCGGAGATGGAGATCCCGGAAGTGTACTTGGAGTCACTGCCAAAGAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAACACCACACACTTGAAGTAGCTAACAGAATAGAGGCTGCCATCCATGTGTGGAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAGCAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGAGTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTGGTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGTCCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATT GCCAGAATTGATGATGTAATTTATGTAGATGATGCAA CAAAGAAGTCTGCCGCTGCTGACTCTGTTTCCATCTTCAAT CGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCTCAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACT CCAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAAAACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATGCCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAGTGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACATCCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTC  TTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTGCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTATATGGCACCTAATGGACAGATCTGACGCTCTTCAGTGACTCTGAAGACTTTCTTATATCAACTGTGAATCTGTGATCGATC]
[+] EMBL AK073737             [  TGCTCTCTCTCCCATCGCTTTCCCCTCCCCTCGCTTGCCGCCGCATCCATCCACCACCTCTCCCCCTCGCGGATGCGATTCCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGACTAGCTAGCTAGCTCGGAGGTCGGAGGGGAGGGGTGGTACGACTACAATGGCGAGCGCGTCGGAGGACGACGCCGGCTCGGAGCGGTGCTGCGGGAGCTACAGCCCGAGCGCGGACGTCAGCGAGTCGGAGACATCCAGCGACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCTTCGCCTCCTCCCCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCCCTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCGAGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGAGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTCCGCCACTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGCTTCGGCG AGGAAGGCGATGTGGACGAGGGAGATGGACTGGCTGCTCTCCGTGGCCGACTCCATCGTCGAGCTCACCCCGTCAATCCAGGAGCTCCCCGACGGCGGGGGACAGTTCGAGGTCATGGTGCCGCGCCCCCGCAGCGACCTCTACATGAACCTCCCGGCGCTCAAGAAGCTCGATGCGATGCTCCTCGCCATGATTGACGGGTTCAAGGAGACCGAGTTCTGGTATGTGGATAGGGGGATCGTGGTTGATGACAGCGGCGGGCCGTTCTCGTCGTCGTCATCCTCCTGCGGGCGGCCGTCGGTGCGGCAGGAGGAGAAATGGTGGCTGCCATGCCCGCGGGTGCCGCCCAAGGGGTTGTCAGAGGATGCGAGGAGGAAGCTGCAACAGGACAGGGATTGTGCGAACCAGATACTGAAGGCGGCCATGGCGATTAACAGCGATGTGCTCGCGGAGATGGAGATCCCGGAAGTGTACTTGGAGTCACTGCCAAAGAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAACACCACACACTTGAAGTAGCTAACAGAATAGAGGCTGCCATCCATGTGTAGAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAGCAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGAGTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTGGTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGTCCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATT GCCAGGATTGATGATGTAATTTATGTAGATGATGCAA CAAAGAAGTCTGCCGCTGCTGACTCTGTTTCCATCTTCAAT CGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCTCAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACT CCAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAAAACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATGCCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAGTGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACATCCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTCTTTTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTGCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTATATGGCACCTAATGGACAGATCTGACGCTCTTCAGTGACTCTGAAGACT                                ]
[+] EMBL AU068190             [                                                                                                                                                                                                                                                                     ACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCTTCGCCTCCTCCTCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCCCTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCGAGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGAGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGNCATCACCAACCTCTCCGCCACTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGNTTCGGCGAAGGAAGGCGATGTTGACGAGGGAGATGGACTGGCTGNTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF327157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gagtagaaATGTGTGTAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAGCAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGAGTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTGGTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGTCCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATT GCCAGAATTGATGATGTAATTTATGTAGATGATGCAA CAAAGAAGTCTGCCGCTGCTGACTCTGTTTCCATCTTCAAT CGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCTCAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACT CCAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAAAACAAGAGGTTAAAGTTGAGAAGCTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU068191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGGCATTTAACATAATTNCCCAGAATTGANGATGTAATTCATGTANATGATGCAACCAAAGAAGTCTCCCGCTGCTGACTCTGTTTCCATCTTCAATCCGTGGAATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCTCAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACTCCCAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGNACAAAGACAACTTACCGACAAAACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATGCCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAGTGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACATCCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAaaa                                                                                                                                                                                                       ]


>consensus_8973#0 CTTGCTCTCTCTCCCATCGCTTTCCCCTCCCCTCGCTTGCCGCCGCATCCATCCACCACC TCTCCCCCTCGCGGATGCGATTCCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGA CTAGCTAGCTAGCTCGGAGGTCGGAGGGGAGGGGTGGTACGACTACAATGGCGAGCGCGT CGGAGGACGACGCCGGCTCGGAGCGGTGCTGCGGGAGCTACAGCCCGAGCGCGGACGTCA GCGAGTCGGAGACATCCAGCGACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCT TCGCCTCCTCCTCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCC CTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCG AGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGA GCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTCCGCCA CTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGCTTCGGCGAGGAAGGCGATGTGGA CGAGGGAGATGGACTGGCTGCTCTCCGTGGCCGACTCCATCGTCGAGCTCACCCCGTCAA TCCAGGAGCTCCCCGACGGCGGGGGACAGTTCGAGGTCATGGTGCCGCGCCCCCGCAGCG ACCTCTACATGAACCTCCCGGCGCTCAAGAAGCTCGATGCGATGCTCCTCGCCATGATTG ACGGGTTCAAGGAGACCGAGTTCTGGTATGTGGATAGGGGGATCGTGGTTGATGACAGCG GCGGGCCGTTCTCGTCGTCGTCATCCTCCTGCGGGCGGCCGTCGGTGCGGCAGGAGGAGA AATGGTGGCTGCCATGCCCGCGGGTGCCGCCCAAGGGGTTGTCAGAGGATGCGAGGAGGA AGCTGCAACAGGACAGGGATTGTGCGAACCAGATACTGAAGGCGGCCATGGCGATTAACA GCGATGTGCTCGCGGAGATGGAGATCCCGGAAGTGTACTTGGAGTCACTGCCAAAGAGTG GTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGG AGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAACACCACACACTTGAAGTAGCTAACA GAATAGAGGCTGCCATCCATGTGTGGAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAG CAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGA GTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTG GTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGT CCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATTGCCAGAA TTGATGATGTAATTTATGTAGATGATGCAACAAAGAAGTCTGCCGCTGCTGACTCTGTTT CCATCTTCAATCGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCT CAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACTC CAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAA AACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATG CCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAG TGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACAT CCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGT GCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCT TTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATG TACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCA GATGCTGCAGTTCTTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAA CTGCACTTGCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTATATGGCACCTAATGG ACAGATCTGACGCTCTTCAGTGACTCTGAAGACTTTCTTATATCAACTGTGAATCTGTGA TCGATC



consensusID : consensus_8973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence
                              [AACAGGTTTCAACACATCCTGTTTTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTTGTTTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATTTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTCTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTTCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTAAAAAAAAAAAAAAA]

[-] EMBL CF327156             [AACAGGTTTCAACACATCCTGTTTTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTTGTTTAGCCCTACTTACAACAAGTAAGGGAATGACTCTTTGAGTCTTGATCGCATTTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTCTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTTCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTAAAAAAAAAAAAAAA]


>consensus_8973#1 AACAGGTTTCAACACATCCTGTTTTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAAC ATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTTGTTTAGCCCTACTTACAACA AGTAAGGGAATGACTCTTTGAGTCTTGATCGCATTTGAACAAGTCATAGTTTCACGTAGC TGCCTCTGTCGGACATGTACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAG CAAGTGATTGAACTTCAGATGCTGCAGTTCTTTTTTTTTTTTTTGTCCCTGGAGGCATCG GTTCCCTAACAATCAACTGCACTTTCAGTGCAATGTATCATGATTTTCTGATGCTGTTGT AAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8973#0      CTTGCTCTCTCTCCCATCGCTTTCCCCTCCCCTCGCTTGCCGCCGCATCCATCCACCACC 60
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TCTCCCCCTCGCGGATGCGATTCCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGA 120
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CTAGCTAGCTAGCTCGGAGGTCGGAGGGGAGGGGTGGTACGACTACAATGGCGAGCGCGT 180
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CGGAGGACGACGCCGGCTCGGAGCGGTGCTGCGGGAGCTACAGCCCGAGCGCGGACGTCA 240
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GCGAGTCGGAGACATCCAGCGACTGCTCCGCGCCGACGACCACCACCACCACCCGCCGCT 300
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TCGCCTCCTCCTCCTCCCGCGGCGTCGCCTCCTCCTCCTCCTCCTCGCTCCTCCCGACCC 360
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CTCCCCCTTCCTCCGCCGCCGCCTTCTTCCTCTCCGCCAAGCCCGCCGCCGACCTCTCCG 420
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      AGGTGGACATGATGAAGGAGCGCTTCGCCAAGCTGCTGCTCGGCGAGGACATGTCCGGGA 480
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTCCGCCA 540
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CTGTGTTCGGCGAGCTGTGGAGGCTGGAGCCGATGGCTTCGGCGAGGAAGGCGATGTGGA 600
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CGAGGGAGATGGACTGGCTGCTCTCCGTGGCCGACTCCATCGTCGAGCTCACCCCGTCAA 660
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TCCAGGAGCTCCCCGACGGCGGGGGACAGTTCGAGGTCATGGTGCCGCGCCCCCGCAGCG 720
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      ACCTCTACATGAACCTCCCGGCGCTCAAGAAGCTCGATGCGATGCTCCTCGCCATGATTG 780
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      ACGGGTTCAAGGAGACCGAGTTCTGGTATGTGGATAGGGGGATCGTGGTTGATGACAGCG 840
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GCGGGCCGTTCTCGTCGTCGTCATCCTCCTGCGGGCGGCCGTCGGTGCGGCAGGAGGAGA 900
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      AATGGTGGCTGCCATGCCCGCGGGTGCCGCCCAAGGGGTTGTCAGAGGATGCGAGGAGGA 960
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      AGCTGCAACAGGACAGGGATTGTGCGAACCAGATACTGAAGGCGGCCATGGCGATTAACA 1020
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GCGATGTGCTCGCGGAGATGGAGATCCCGGAAGTGTACTTGGAGTCACTGCCAAAGAGTG 1080
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGG 1140
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      AGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAACACCACACACTTGAAGTAGCTAACA 1200
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GAATAGAGGCTGCCATCCATGTGTGGAGGTTGAAGGGCCAAAAGAAATCCACGCCTCAAG 1260
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CAAAATCAAAGAAATCTTGGGGTGGAAAAGTGAAGGGACTTGTTGGAGATACAGAAAAGA 1320
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GTCATGTTTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTG 1380
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      GTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGGACGTTGGGCAGT 1440
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CCATACTAGAGAGTTACTCAAGGGTTCTGGAGAGCTTGGCATTTAACATAATTGCCAGAA 1500
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TTGATGATGTAATTTATGTAGATGATGCAACAAAGAAGTCTGCCGCTGCTGACTCTGTTT 1560
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CCATCTTCAATCGTGGCATTGGCGTACCAGTTCAGAAGAGGATCTCCCCAAGCCCGTTCT 1620
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CAATTCAGCATACACCATATGCCTCTCCATTTGCTACACCCACTTTCTGCTCCTCCACTC 1680
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CAGTTACAGGCAGCCCTGGAAGAGTACAGCCTCCATTGAACAAAGACAACTTACCGACAA 1740
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      AACAAGAGGTTAAAGTTGAGAAGCTGTTTTCTGGTGATATCGAGAAGGTCTGGACGTATG 1800
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      CCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAG 1860
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TGAAGAAAGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACAT 1920
consensus_8973#1      -------------------------------------------AACAGGTTTCAACACAT 17
                                                                 *****************

consensus_8973#0      CCTGTTCTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGT 1980
consensus_8973#1      CCTGTTTTGGTCTCTAGCTAGATTTTCCCTGTACAGAAGCAACATGATTCATTTTTTTGT 77
                      ****** *****************************************************

consensus_8973#0      GCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTAAGGGAATGACTCT 2040
consensus_8973#1      GCTTTCTTAGCGAGCCAAGGGTTGTTTAGCCCTACTTACAACAAGTAAGGGAATGACTCT 137
                      ********************** ** **********************************

consensus_8973#0      TTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATG 2100
consensus_8973#1      TTGAGTCTTGATCGCATTTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATG 197
                      ***************** ******************************************

consensus_8973#0      TACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCA 2160
consensus_8973#1      TACTCTTCTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCA 257
                      ************************************************************

consensus_8973#0      GATGCTGCAGTTCTTTTTTTTTTTTTTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAA 2220
consensus_8973#1      GATGCTGCAGTTCTTTTTTTTTTTTTT-GTCCCTGGAGGCATCGGTTCCCTAACAATCAA 316
                      *************************** ********************************

consensus_8973#0      CTGCACTTGCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTATATGGCACCTAATGG 2280
consensus_8973#1      CTGCACTTTCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTAAAAAAAAAAAAAAA- 375
                      ******** ************************************ *    *   **   

consensus_8973#0      ACAGATCTGACGCTCTTCAGTGACTCTGAAGACTTTCTTATATCAACTGTGAATCTGTGA 2340
consensus_8973#1      ------------------------------------------------------------
                                                                                  

consensus_8973#0      TCGATC 2346
consensus_8973#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)