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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2057 fasta sequence
[AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACCGATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTTAAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTATAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATT-GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT-TTCATGACAAT-ACTAGGAATAC-AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCA--AAAAAAAAAAA]
[+] EMBL AA753614 [AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACCGATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTTAAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGC ]
[+] EMBL AK119652 [ GTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTATAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATT GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT TTCATGACAAT ACTAGGAATACAAAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGGTTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTC ]
[+] EMBL BI801093 [ AGCATGCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCT CTGGACATGGTGATAGTTTTCGTACTCTTGATGA GCCAATATACCCCAGCTACATCAGGA CAGAAAAACTTTATTTCACAAGATGCTATT GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT TTCATGACAAT ACTAGGAATAC AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCA AAAAAAAA ]
[+] EMBL BI802275 [ GCTATTGGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATGTTCATGACAATGACTAGGAATAC AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCATGATAAAAAAAAA]
[+] EMBL BI799132 [ TAGGAATAC AAATAAGC ACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTT ]
consensusID : consensus_8979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[TAGGGAAATTCACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACATAATAATAAGACCTCTGTTTGCTTCATGATAAAA]
[+] EMBL BI801312 [TAGGGAAATTCACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACATAATAATAAGACCTCTGTTTGCTTCATGATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8979#0 AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACC 60
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTT 120
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGG 180
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTT 240
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCG 300
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCAT 360
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGA 420
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGG 480
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGA 540
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCC 600
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTA 660
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTA 720
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 TAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCG 780
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTT 840
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAA 900
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 TCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCA 960
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAA 1020
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAA 1080
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 ATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTT 1140
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCT 1200
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTG 1260
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAA 1320
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 TCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCAC 1380
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 AAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGC 1440
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 ATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTT 1500
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 ATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCC 1560
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 CCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTT 1620
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCT 1680
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 ATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAG 1740
consensus_8979#1 ------------------------------------------------------------
consensus_8979#0 GACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATTTC 1800
consensus_8979#1 -----------------------------------------------------------T 1
consensus_8979#0 ATGACAATACTAGGAATACAAATAAGCAACGAA-CTGAAGAAGGATGCATCCTGGTTAAT 1859
consensus_8979#1 AGGGAAATTC---ACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAAT 58
* * *** * * * ** ********** **************************
consensus_8979#0 CCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTG-TGTTGAAGCTTTATGATT 1918
consensus_8979#1 CCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATT 118
***************************************** ******************
consensus_8979#0 TACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTA 1978
consensus_8979#1 TACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAG-CGGTA 177
****************************************************** *****
consensus_8979#0 ATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGT 2038
consensus_8979#1 ATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACA-TAATAATAAGACCTCTGT 236
***************************************** ******************
consensus_8979#0 TTGCTTCAAAAAAAAAAAA 2057
consensus_8979#1 TTGCTTCATGATAAAA--- 252
******** * ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||