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Oryza sativa
cluster # 8988 cluster # 8988       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8988#0 length = 1671 sequences # 4  
consensus_8988#1 length = 759 sequences # 2  

consensusID : consensus_8988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1671
fasta sequence
                              [CCCCCAACTTTGATCTCTCCCACCACTACTACTCATCCATCAAATCAACGTCGCTCCCCTCCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCAGAGCAAAGAAGGGGGAACATCGCCAGGAAAAAGATCGGTGGCGAGAGAAGGCGGAAAGCGAAGGAAAGCGAGGGGAGCAAAAGGAGAGAGAGAGAGAGTCTTTTCAATTTTCTTTTGTTTTTCTTTTCTCCCTGCAAGAGGCAGCTCGGCGTTGCTGCGAATTCCATCCATGTCGCTCGCCGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACCTCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTTCCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCAGTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAATCTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCAATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGCATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTGAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAATTGTAATGCCAGTATGTAAATGAAGTATAC]

[+] EMBL AK072281             [CCCCCAACTTTGATCTCTCCCACCACTACTACTCATCCATCAAATCAACGTCGCTCCCCTCCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCAGAGCAAAGAAGGGGGAACATCGCCAGGAAAAAGATCGGTGGCGAGAGAAGGCGGAAAGCGAAGGAAAGCGAGGGGAGCAAAAGGAGAGAGAGAGAGAGTCTTTTCAATTTTCTTTTGTTTTTCTTTTCTCCCTGCAAGAGGCAGCTCGGCGTTGCTGCGAATTCCATCCATGTCGCTCGCCGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACCTCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTTCCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCAGTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAATCTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCAATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGCATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTGAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAATTGTAATGCCAGTATGTAAATGAAGTATAC]
[+] EMBL AK104986             [                                                  TCGCTCCCCTCCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCAGAGCAAAGAAGGGGGAACATCGCCAGGAAAAAGATCGGTGGCGAGAGAAGGCGGAAAGCGAAGGAAAGCGAGGGGAGCAAAAGGAGAGAGAGAGAGAGTCTTTTCAATTTTCTTTTGTTTTTCTTTTCTCCCTGCAAGAGGCAGCTCGGCGTTGCTGCGAATTCCATCCATGTCGCTCGCCGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACCTCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTTCCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTCGGTAGCTCACCAGTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAATCTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCAATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGCATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTGAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTATATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAATTGTAATGCCAGTATGTAAATGAAGTATAC]
[+] EMBL CB619339             [                                                                                                                                                                                                                                                                                                  TGTCGCTCTTTGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACCTCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTTCCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCAGTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAATCTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCAATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGCATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAACCGATTGCAGGGCCATGCTGCGCTCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB619366             [                                                                                                                                                                                                                                                                                                   GTCGCTCTTCGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACCTCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTTCCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCAGTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAATCTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCAATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGCATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTGATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATCCTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCTTCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGCTGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_8988#0 CCCCCAACTTTGATCTCTCCCACCACTACTACTCATCCATCAAATCAACGTCGCTCCCCT CCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCA GAGCAAAGAAGGGGGAACATCGCCAGGAAAAAGATCGGTGGCGAGAGAAGGCGGAAAGCG AAGGAAAGCGAGGGGAGCAAAAGGAGAGAGAGAGAGAGTCTTTTCAATTTTCTTTTGTTT TTCTTTTCTCCCTGCAAGAGGCAGCTCGGCGTTGCTGCGAATTCCATCCATGTCGCTCGC CGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACC TCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTT CCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCA GTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAAT CTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCA ATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGC ATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTG ATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATC CTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCT TCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGC TGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCT TGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGG GCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGG GCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTG TGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGG AGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCAC AGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGG TGACTTCTGCTTCTCTATCTGAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGA TTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTT ATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTT CTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTT CACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATAGCACTGCAAGAATATGT GCTTAATCATGTTTTTGAAAATTGTAATGCCAGTATGTAAATGAAGTATAC



consensusID : consensus_8988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 759
fasta sequence
                              [AGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTTAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATATATATATATATATATATATATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAAGTTGTAATGCCACGTATGTAAATGAAGT]

[-] EMBL CB619365             [AGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTTAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATATATATATATATATATATATATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAAGTTGTAATGCCACGTATGTAAATGAAGT]
[-] EMBL CB619338             [                                                  AATCAGCAGCTGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTTAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTTCACTGTGTATAGAGTACGGAGTACTCGTGTATATATATATATATATATATATATATATATATATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAA TTGTAATGCCA GTATGTAAATGAAGT]


>consensus_8988#1 AGGCGCATGCGGCTTTCTTGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGC TGCTGAAGCGATTGCAGGGCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCA TCCTACTCGATGTCCGGGGCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGC CGTGCAGTGTTGGCTCTGTGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTG AGATTGGAGGGGTCTGGGAGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACA AAGATGGTAGCATGTCACAGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGG ATGTTGTCGGAAGCTTGGTGACTTCTGCTTCTCTATCTTAGTGAATGCTTTTAAAGGATG TTTCAGTTGTTTGGCAGATTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGT AAACAATTTTTGTCAGTTATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGA TCTGGTGCCTTTTATGTTCTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATG ACTCCTCGTGTAAGTGTTCACTGTGTATAGACTACGGAGTACTCGTGTATATATATATAT ATATATATATATATATATATATATATATATATAGCACTGCAAGAATATGTGCTTAATCAT GTTTTTGAAAAGTTGTAATGCCACGTATGTAAATGAAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8988#0      CCCCCAACTTTGATCTCTCCCACCACTACTACTCATCCATCAAATCAACGTCGCTCCCCT 60
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      CCTCCTCTCGCGGCGCGGCTCCTTTCCAAGATTCTCCGATCCCCAAACCCCCAATCGCCA 120
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      GAGCAAAGAAGGGGGAACATCGCCAGGAAAAAGATCGGTGGCGAGAGAAGGCGGAAAGCG 180
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      AAGGAAAGCGAGGGGAGCAAAAGGAGAGAGAGAGAGAGTCTTTTCAATTTTCTTTTGTTT 240
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      TTCTTTTCTCCCTGCAAGAGGCAGCTCGGCGTTGCTGCGAATTCCATCCATGTCGCTCGC 300
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      CGTCCTCAGGATGAGGTTTTGATGCCCGAATCCGGCCTTTTCTCTGTCTATTTCAGCACC 360
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      TCATCGATTTTTTTTGGCTCTTGTGATGCCCTCTGTCGTAGAGCTCCCCAATCAGGGCTT 420
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      CCTCACTTGTGCCATGTTTGTTGCTCACTCCTTTCTTGATTATTAGTTGGTAGCTCACCA 480
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      GTTTTTGCAGGGGTTTTGGCAGATCATGTAGTCTGCCTGCTCAATCCCTGGTCAGTTAAT 540
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      CTAGAAACCTCATTGAATAAACAAGTTCAGAGGTTCTTGATTCCTTTTGTTGCAATTGCA 600
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      ATTGCAACTTTGTTGTGCAAATTGTCCATTGACCCATACAAAGGAGATTGTTCTTGGCGC 660
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      ATTCTGCGGCAATGGACGATGTCCCAAGTCAATTGCTCTTCTCCCATCCGGAGGTGCCTG 720
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      ATAGCTTCGATGATTTCTTGAACAACATCACAACCTGCACCCACACCCACACCTGCAATC 780
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      CTCCTGGTCCGTCGGCAACCATGCACACCCACACATGCTTGCACACGCACACCCAGGTCT 840
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      TCGCCTCCGGCAGTGGCGAAGATGACATCAAGGAGGACCTGACGAAGACCCGGAGGCCGC 900
consensus_8988#1      ------------------------------------------------------------
                                                                                  

consensus_8988#0      TGGGGAACAGGGAAGCCGTGCGCAAGTATCGGGAGAAGAAGAAGGCGCATGCGGCTTTCT 960
consensus_8988#1      ------------------------------------------AGGCGCATGCGGCTTTCT 18
                                                                ******************

consensus_8988#0      TGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGG 1020
consensus_8988#1      TGGAGGAGGAGGTCAAGAAGCTCCGCGCCGCCAATCAGCAGCTGCTGAAGCGATTGCAGG 78
                      ************************************************************

consensus_8988#0      GCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGG 1080
consensus_8988#1      GCCATGCTGCGCTCGAGGCTGAGGTGATCAGGTTAAGGAGCATCCTACTCGATGTCCGGG 138
                      ************************************************************

consensus_8988#0      GCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTG 1140
consensus_8988#1      GCAAGATTGATATGGAGATCGGCACATTCCCTTACCAGAAGCCGTGCAGTGTTGGCTCTG 198
                      ************************************************************

consensus_8988#0      TGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGG 1200
consensus_8988#1      TGGCATGCACTGATCCAGGTATGTGCTTCAATGGCAATTCTGAGATTGGAGGGGTCTGGG 258
                      ************************************************************

consensus_8988#0      AGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCAC 1260
consensus_8988#1      AGGAGTGCTCTAGACCAGTGGGTGCAGATCGCATGATCGACAAAGATGGTAGCATGTCAC 318
                      ************************************************************

consensus_8988#0      AGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGG 1320
consensus_8988#1      AGGAAATTGATATCCCAGGACCGGTGCATTCCATTTCCATGGATGTTGTCGGAAGCTTGG 378
                      ************************************************************

consensus_8988#0      TGACTTCTGCTTCTCTATCTGAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGA 1380
consensus_8988#1      TGACTTCTGCTTCTCTATCTTAGTGAATGCTTTTAAAGGATGTTTCAGTTGTTTGGCAGA 438
                      ******************** ***************************************

consensus_8988#0      TTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTT 1440
consensus_8988#1      TTTTCAATCCATGCCATGCCAGGTTCTTCTTACTTGAGGGGTAAACAATTTTTGTCAGTT 498
                      ************************************************************

consensus_8988#0      ATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTT 1500
consensus_8988#1      ATACTCTCATGGAATAAAAGGGTAACAACGAGTAGGAACTGATCTGGTGCCTTTTATGTT 558
                      ************************************************************

consensus_8988#0      CTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTT 1560
consensus_8988#1      CTAATGATACTCCTTGTGTAAGTTTTTCTTTTTTAGTTAATGACTCCTCGTGTAAGTGTT 618
                      ************************************************************

consensus_8988#0      CACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATA----------------- 1603
consensus_8988#1      CACTGTGTATAGACTACGGAGTACTCGTGTATATATATATATATATATATATATATATAT 678
                      *******************************************                 

consensus_8988#0      ---------------GCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAA-TTGTAA 1647
consensus_8988#1      ATATATATATATATAGCACTGCAAGAATATGTGCTTAATCATGTTTTTGAAAAGTTGTAA 738
                                     ************************************** ******

consensus_8988#0      TGCCA-GTATGTAAATGAAGTATAC 1671
consensus_8988#1      TGCCACGTATGTAAATGAAGT---- 759
                      ***** ***************    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)