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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1241 fasta sequence
[GTGGCGAGCGACGCAGGTGGCCGGCAAGCTCGTAAGCGGCTGCGGCGGCTTGTGGCTTTTGACGGCTTGGCGTCGGCGGCTTGTGGCCGGCAACGGCGATGACGACGACGAAGGGGACGTCGCGACGGAAGTCCGGATGGGGGCGGGAGCTCGATCCAGATGTGGGCGTTGAGATATGGTGTGAGGAGAGAGAATCGCTATATTTGGCTGAAACATGCTCGCTTTGGCGCATCATCCATATTTGGCGGAAACATGCCGTATCTGCTGGAGGCCCATTTTCACCTCCCGTACACCATCATATGATGGAGGATCTCCTGGGGATGCTCCAATATGTTAGATACCCTGAATAATTACGGTTGTGACTTTGTTGTACATAATAGAAATACCTCCTGTAAAGCTATGTATTTCAACAAATGTAAAATAGAAATACCATAAATTCCCTTCATTTCCACCATGTAGTCTTGAAACTGACTGATTTTATTTTGAGAAGTGCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGTAAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGTGCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATTGGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTTAGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAAGGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTCAGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGNCACAACAAAAAATCTATAAATGCCTTGTTGCCACGGCTACATTACTACCAGGATGGTAACTTGTATTGTTCATGATATGGNTGGCCATTGAAGTTGTGGCCAAAATAAAGGA]
[+] EMBL AK112053 [GTGGCGAGCGACGCAGGTGGCCGGCAAGCTCGTAAGCGGCTGCGGCGGCTTGTGGCTTTTGACGGCTTGGCGTCGGCGGCTTGTGGCCGGCAACGGCGATGACGACGACGAAGGGGACGTCGCGACGGAAGTCCGGATGGGGGCGGGAGCTCGATCCAGATGTGGGCGTTGAGATATGGTGTGAGGAGAGAGAATCGCTATATTTGGCTGAAACATGCTCGCTTTGGCGCATCATCCATATTTGGCGGAAACATGCCGTATCTGCTGGAGGCCCATTTTCACCTCCCGTACACCATCATATGATGGAGGATCTCCTGGGGATGCTCCAATATGTTAGATACCCTGAATAATTACGGTTGTGACTTTGTTGTACATAATAGAAATACCTCCTGTAAAGCTATGTATTTCAACAAATGTAAAATAGAAATACCATAAATTCCCTT ]
[+] EMBL CF306123 [ CTCCAATATGTTAGATACCCTGAATAATTACGGTTGTGACTTTGTTGTACATAATAGAAATACCTCCTGTAAAGCTATGTATTTCAACAAATGTAAAATAGAAATACCATAAATTCCCTTCATTTCCACCATGTAGTCTTGAAACTGACTGATTTTATTTTGAGAAGTGCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGTAAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGTGCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATTGGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTTAGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAAGGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCG ]
[+] EMBL C26243 [ ACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTCAGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGNCACAACAAAAAATCTATAAATGCCTTGTTGCCACGGCTACATTACTACCAGGATGGTAACTTGTATTGTTCATGATATGGNTGGCCATTGAAGTTGTGGCCAAAATAAAGGA]
consensusID : consensus_8995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 554 fasta sequence
[CGCGACGGCGCCATCCGCGCTCAAGGCACCTACGCTGAAGCCCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGTAAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGTGCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATTGGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGT-CTTAGGTGTTGATTTTATGTCAG-AAAATGTTC-GTGCAATACTTGATCAAGCTGGATATAGCAAGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATT]
[+] EMBL CF324521 [CGCGACGGCGCCATCCGCGCTCAAGGCACCTACGCTGAAGCCCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGTAAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGTGCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATTGGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGT CTTAGGTGTTGATTTTATGTCAG AAAATGTTC GTGCAATACTTGATCAAGCTGGATATAGCAAGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATT]
[+] EMBL AU062728 [ GCGCTCAAGGCACCTACGCTGAAGCCCAGGNAATGTTCTTGTCTCGNAATGAATCCAAGACTTCAGAGCTTGTAAAATCCCNTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGTTCCGGAGGTGCAAGGCATATTAACTNCTTCAAAGAAGCATTGGCCTCACATCCACATTTNTGATTCATTGGTAATGGCAGATAGTGCAGTCAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCCTTAGGTGTTGATTTTATGTCAGAAAAATGTTCGGNGCAATACTT ]
consensusID : consensus_8995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[AAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTTAGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAAGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTCAGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGTCACAACAAAA]
[+] EMBL CF324204 [AAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTTAGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAAGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTTCAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATGTTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAGGTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTCAGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGTCACAACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8995#0 GTGGCGAGCGACGCAGGTGGCCGGCAAGCTCGTAAGCGGCTGCGGCGGCTTGTGGCTTTT 60
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 GACGGCTTGGCGTCGGCGGCTTGTGGCCGGCAACGGCGATGACGACGACGAAGGGGACGT 120
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 CGCGACGGAAGTCCGGATGGGGGCGGGAGCTCGATCCAGATGTGGGCGTTGAGATATGGT 180
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 GTGAGGAGAGAGAATCGCTATATTTGGCTGAAACATGCTCGCTTTGGCGCATCATCCATA 240
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 TTTGGCGGAAACATGCCGTATCTGCTGGAGGCCCATTTTCACCTCCCGTACACCATCATA 300
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 TGATGGAGGATCTCCTGGGGATGCTCCAATATGTTAGATACCCTGAATAATTACGGTTGT 360
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 GACTTTGTTGTACATAATAGAAATACCTCCTGTAAAGCTATGTATTTCAACAAATGTAAA 420
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 ATAGAAATACCATAAATTCCCTTCATTTCCACCATGTAGTC-TTGAAACTGACTGATTTT 479
consensus_8995#1 -----------------------------CGCGACGGCGCCATCCGCGCTCAAGGCACCT 31
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 ATTTTGAGAAGTGCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGT 539
consensus_8995#1 ACGCTGA--AGCCCAGGCAATGTTCTTGTCTCCTAATGAATCCAAGACTTCAGAGCTTGT 89
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 AAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGT 599
consensus_8995#1 AAAATCCCTTAGGGAGAAAAAAATAGGGATTGTCGCACACTTTTATATGGATCCGGAGGT 149
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 GCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATT 659
consensus_8995#1 GCAAGGCATATTAACTGCTTCAAAGAAGCATTGGCCTCACATCCACATTTCTGATTCATT 209
consensus_8995#2 ------------------------AAAAAATAGGGATTGT-CGCACACT-----TTTATA 30
** ** ** * **** * ** **
consensus_8995#0 GGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTT 719
consensus_8995#1 GGTAATGGCAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTT 269
consensus_8995#2 TGGATCCGGAGATAGTGCAGTGAAGATGGCTGAAGCAGGATGCGAATATATCACTGTCTT 90
* * * ***************************************************
consensus_8995#0 AGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAA 779
consensus_8995#1 AGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAA 329
consensus_8995#2 AGGTGTTGATTTTATGTCAGAAAATGTTCGTGCAATACTTGATCAAGCTGGATATAGCAA 150
************************************************************
consensus_8995#0 GGGTTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTT 839
consensus_8995#1 GG-TTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTT 388
consensus_8995#2 GG-TTGGTGTTTATAGAATGTCAAGTGATCAAATTGGCTGTTCATTGGCAGACGCTGCTT 209
** *********************************************************
consensus_8995#0 CAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATG 899
consensus_8995#1 CAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATG 448
consensus_8995#2 CAAGTTCTGCATATACACATTTTTTGAAAGAAGCATCAAGATCTCCTCCTTCTTTACATG 269
************************************************************
consensus_8995#0 TTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAA 959
consensus_8995#1 TTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAA 508
consensus_8995#2 TTATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAA 329
************************************************************
consensus_8995#0 TAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAG 1019
consensus_8995#1 TAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATT-------------- 554
consensus_8995#2 TAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGGCATTTGCCCAAATACCAG 389
**********************************************
consensus_8995#0 GTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTC 1079
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 GTCTTAATGTCTGGTATGGCCCGGATTCTTATATGGGTGCAAACATTGCGGATCTATTTC 449
consensus_8995#0 AGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGNCACAACAAAA 1139
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 AGAGAATGGCTGTCATGTCAGATGAGGAAATTGCAGAAGTACATCCAAGTCACAACAAAA 509
consensus_8995#0 AATCTATAAATGCCTTGTTGCCACGGCTACATTACTACCAGGATGGTAACTTGTATTGTT 1199
consensus_8995#1 ------------------------------------------------------------
consensus_8995#2 ------------------------------------------------------------
consensus_8995#0 CATGATATGGNTGGCCATTGAAGTTGTGGCCAAAATAAAGGA 1241
consensus_8995#1 ------------------------------------------
consensus_8995#2 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||