These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 959 fasta sequence [TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCCCAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAAGCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAATAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATCTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTTCCGTTCAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACATGATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAAAAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACCCGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATATATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACTTTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATTACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTTTTC] [+] EMBL BE039667 [TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCCCAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAAGCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAATAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATCTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTTCCGTTCAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACATGATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAAAAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACCCGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATATATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACTTTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATTACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTTTTC] consensusID : consensus_9#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CGAGACAAGGGGGGCTATGGCCCAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAAGCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAATAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTATCTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCGGTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGGGGGCCTGGT] [+] EMBL CA765392 [CGAGACAAGGGGGGCTATGGCCCAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAAGCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAATAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTATCTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCGGTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGGGGGCCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9#0 TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTC 60 consensus_9#1 ------------------------------------------------------------ consensus_9#0 CCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCC 120 consensus_9#1 --------------------------------------CGAGACAAGGGGGGCTATGGCC 22 * * ********** consensus_9#0 CAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTC 180 consensus_9#1 CAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTC 82 **** ****** ************************************************ consensus_9#0 TTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATC 240 consensus_9#1 TTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATC 142 ************************************************************ consensus_9#0 ATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAA 300 consensus_9#1 ATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAA 202 ************************************************ *********** consensus_9#0 GCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAA 360 consensus_9#1 GCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAA 262 ****** ************** * ********************** ************* consensus_9#0 TAGTGCAAAGGGCACC-TAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGG 419 consensus_9#1 TAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGG 322 **************** ******** ********************************** consensus_9#0 ATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTAT 479 consensus_9#1 ATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTAT 382 ********************************************** ************* consensus_9#0 CTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTT-CCG 538 consensus_9#1 CTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCG 442 ******************* * ******** ******* **** *** ******** *** consensus_9#0 TTCAGGCGCTTAA-TTCTA-CCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACAT 596 consensus_9#1 GTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGG--GGGCCTGGT-------------- 486 *** ****** * ***** ***** * *** ** **** consensus_9#0 GATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAA 656 consensus_9#1 ------------------------------------------------------------ consensus_9#0 AAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACC 716 consensus_9#1 ------------------------------------------------------------ consensus_9#0 CGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATAT 776 consensus_9#1 ------------------------------------------------------------ consensus_9#0 ATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACT 836 consensus_9#1 ------------------------------------------------------------ consensus_9#0 TTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATT 896 consensus_9#1 ------------------------------------------------------------ consensus_9#0 ACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTT 956 consensus_9#1 ------------------------------------------------------------ consensus_9#0 TTC 959 consensus_9#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||