cluster # 9029

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Oryza sativa
cluster # 9029 cluster # 9029 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9029#0 length = 757 sequences # 1

consensus_9029#1 length = 705 sequences # 5

consensusID : consensus_9029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence

                              [CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGATCGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGCTGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCATGCATGCAGCTTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAATGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCATGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAGGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGGAGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTACCCGCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAATCATAGAGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACAGTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCTCACTTAATTGGAAATGAAAACTACAACACTTGGATATATCATTTGCTGTTTCCT]

[+] EMBL AK120542             [CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGATCGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGCTGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCATGCATGCAGCTTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAATGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCATGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAGGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGGAGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTACCCGCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAATCATAGAGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACAGTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCTCACTTAATTGGAAATGAAAACTACAACACTTGGATATATCATTTGCTGTTTCCT]




>consensus_9029#0
CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGAT
CGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGC
TGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCATGCATGCAGCT
TAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAAT
GCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCAT
GGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGGA
CCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCAG
GAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGGA
GAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACTA
CCCGCCGGCGACGGTGGTCTGCAGCGACGAGCCGAGCCCCTGCTCCATCATGTAAATCAA
TCATAGAGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAATTGATCAGTAGTACA
GTACATCGATCGAGTGAACGAAATATATCATTTGCTGTTTCCTCACTTAATTGGAAATGA
AAACTACAACACTTGGATATATCATTTGCTGTTTCCT

consensusID : consensus_9029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 705
fasta sequence

                              [GCTCAGCTAGCTACAATCGCAAATAGCTGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG-CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTAGCAAAAAAAAAAA]

[+] EMBL AK062816             [GCTCAGCTAGCTACAATCGCAAATAGCTGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAAT                     ]
[+] EMBL AU057754             [                           TGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTC                                                                                                                                                                                                                                        ]
[+] EMBL AU174873             [                           TGCAGCGATCGAGCGAATATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAGCCCGGAGGAGAAGAAGCCGGAGCCGNGCTACTG                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU057755             [                                                                                                                                                                                                                                    TGAGCTCGGTGGAGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTAGCAAAAAAAAAAA]
[+] EMBL AU174872             [                                                                                                                                                                                                                                                    CACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAG CCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACTATAATGTTCAGTA  AAAAAAAA   ]




>consensus_9029#1
GCTCAGCTAGCTACAATCGCAAATAGCTGCAGCGATCGAGCGAATATTGATCGTGCTCGA
TCATCTTAGCCGCATTGCAAACGATCGAATCGATCGGCCGATAGCCTTTCTCGTTGGCAT
TTTATTTCAAGCAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCG
AGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGG
AGGTCACCGGCGACGGCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCT
GCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGG
TGAAGGAGAAGAAGCCGGAGGAGAAGAAGCCGGAGGAGAAGAAGCCGGAGCCGTGCTACT
GCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACC
AGCCGAGCGACCCCTGCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTT
TGCAGTGATTTCTTCAGCGATTTGGTATGGCTATGTACAAAGAAATAGTAGGAGTGGTAG
ATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAA
TTGGAAATGAAAACTTACTATAATGTTCAGTAGCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9029#0      CTAGAAATCGCAACGCACGCAGCTAGGAAATCTGCAGCGAGCGAGCGAGCTCATCTTGAT 60
consensus_9029#1      ------------------------------------------------------------
                                                                                  

consensus_9029#0      CGCATTGCATCTGCACTGCAAACGATCGAATCGAATCGAATCGGCCGAGGCATTTCACGC 120
consensus_9029#1      ---------------------------------GCTCAGCTAGCTACAATCGCAAATAGC 27
                                                         **   * *    *  *       **

consensus_9029#0      TGAACACGATGACGAAGGTGAGGGAAACTGTTCGATTAGTTGCTTCGCAT-GCATGCAGC 179
consensus_9029#1      TGCA-GCGATCGAGCGAAT-ATTGATCGTGCTCGATCATCTTAGCCGCATTGCAAACGAT 85
                      ** *  ****   *    * *  **   ** ***** *  *    ***** ***  *   

consensus_9029#0      TTAATTAGTTTTGATGATCCACTGATGAATCAGTTTCTTATTGGGGGCGTGGTTGAATAA 239
consensus_9029#1      CGAATCGATCG-GCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGCAGAAC---ACGA 141
                        ***   *   *  ***   **      *  *  * *****    **        *  *

consensus_9029#0      TGCAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCCA 299
consensus_9029#1      TGAAGCAAAAGATCGTGATCAAGGTGAGCATGCCGTGCGAGAAGAGCCGGTCCAAGGCGA 201
                      ** ******************************************************* *

consensus_9029#0      TGGCGCTGGTGGCGAGGGCGTCCGGCGTGAACTCGATGGAGGTCACCGGCGACGGCAAGG 359
consensus_9029#1      TGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACGGCAAGG 261
                      **  ******** ** *** ********** **** ************************

consensus_9029#0      ACCGGCTGCAGGTGGTCGGCGACGGCGTCGACCCGGTCTGCCTCGTCGCCTGCCTCCGCA 419
consensus_9029#1      ACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCA 321
                      ******************************** *** ********** ************

consensus_9029#0      GGAAGATCGGCTACGCCGAGATCGTTCAGGTGGAGGAGGTGAAGGACAAGAAGCCGGAGG 479
consensus_9029#1      AGAAGATCGGCCACGCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGG 381
                       ********** **** *** **** ******************** *************

consensus_9029#0      AGAAGCAGCCGGAGCCACCCAAGCCCGTGCCATGCTACTACCCAGCTCCTCCCTGCTACT 539
consensus_9029#1      AGAAGAAGCCGGAGGAGAAGAAGCCGGAGCCGTGCTACTGCCCTCATCCCTGCTACTACC 441
                      ***** ********      ***** * *** ******* ***   ***   ** **** 

consensus_9029#0      ACCCGC----CGGCGA-----CGGTGGTCTGCAGCGACGAGCCGAGC---CCCTGCTCCA 587
consensus_9029#1      ACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCTGCTCCA 501
                      ***  *    *** *      ****** *  * ***** ********   **********

consensus_9029#0      TCATGTAAATCAATCATAG--AGTTCGATCGATCGAGTTTTGCAGTAATTTCTTCAGCAA 645
consensus_9029#1      TCATGTAA-TCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGA 560
                      ******** ***   ****  *    ********** ********* *********** *

consensus_9029#0      TTGATCAGTAGTACAGTACATCGATCGAGTGAACG----AAATATATCAT-TTGCTGTTT 700
consensus_9029#1      TTTGGTA-TGGCTATGTACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATAT 619
                      **    * * *    *****  **   ***    *    * *****  **  * ** * *

consensus_9029#0      CCTCA-----CTTAATTGGAAATGA--AAACTACAAC--ACTTGGATAT-ATCATTTGCT 750
consensus_9029#1      CTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCAAACTTAATTGGAAATGAAAACTTACT 679
                      * *       ***  ** *   **   ***    ***  * ***** ** *  * ** **

consensus_9029#0      GTTTCCT------------------- 757
consensus_9029#1      ATAATGTTCAGTAGCAAAAAAAAAAA 705
                       *    *