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Oryza sativa
cluster # 9039 cluster # 9039       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9039#0 length = 1480 sequences # 6  

consensusID : consensus_9039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1480
fasta sequence
                              [CACTATGCCGTTATCCTCTCTCTCCCTCCTCCCCCTCCACCGCGCTCCGCTCCCGCCAACTTCAAATTACCCGCCACCGCCGCCTCCCTCTCGCGCCCTCCTCCTCCCCCTCCTCCGCCACTCGCCGCTCGCGCGCCGCTCGCCCGTCTCCCGGGCGCGTGCCGTAGCAGCCGACGGCATGGCCGCGGCGACCGCGGCGGCGGAGACGCCGCCCACGCTGCTCGAGTACATGGGCCAGGCTGGCGCGGCCGACGACCTCGTCGTCCTCGTGGCGCACGTCCAGAGCGCGTGCAAGCGCATCGCCGCGCTCGTGGCGTCGCCCGGGAACGCCGAGCTGTCGCGGGGGAAGGCGGGGGGTGGTGTGGCGGTGGCGGCCGGGCGGGACGCGCCCAAGCCGCTCGACGAATTGTCGAATGAGATCATCTTGTCATCACTCCGAAGATCTGGAAAGGTTGCAGTGATGGCTTCTGAAGAAAATCATCTCCCCATTTGGGTTTCCAACGACAGCCCGTATGTTGTTGTTACGGATCCGCTTGATGGTTCTCGCAACATTGAGGTATCCATTCCCACCGGAACAATATTTGGGATATACAATAGGCTGGCAGAGCTTGACCATCTACCT-GAAGAGGAGAGAGCT-CAGCTCAATTCACTGCAAAGCGGCACTCACCTTGTCGCTTCGGGGTATGTGCTGTATTCATCTGCCACCATATTCTGTATCAGCTTCGGTGCAGGTACCCATGGCTTCACCTTGGATCACTTGACTGGAGAATTTGTTCTAACACATCCTTCCATCCAAATACCCCCAAGAGGACAGATATATTCGGTGAATGATGCGCGGTATTTCGACTGGCCTGAGGGCCTAAGGAAGTACATTGACACGATCAGACAAGGCAAGGGACAGCATCCGAAGAAGTACTCGGCACGG-TACGTGTGCTCGCTGGTTGCT-GATTTCCACCGGACGCTGATATACGGCGGAGTTGCCATGAACCCCAGGGATCACCTTCGGTTGGTCTATGAAGCAAATCCTCTGAGTTTCCTTGCTGAGCAGGCAGGGGGCAGGGGTTCAGATGGCAAGAGCAGAATCCTCTCGATTCAGCCTGTGAAGCTGCACCAGAGGCTGCCATTGTTCCTGGGAGGCATGGAGGACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACAGAAGGTTAATCCTGGATATGAGGTGTGAAGATATATAACCTTAGATAATGAGGTCTGAAGATAATGTAGCATGCGAAAAGAGAACAGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACCGATGTTTTTACCTGTCAGGTTTTCT-GTTTTTGTCTCC-GCGACTATGCGGTTTCACTGTGTAATATAGCAGAAAAATTAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATT-TATATGTAATGCAT-CCTTTGGCTACATGGACACTTTTATCTGGCAAAAAAAAAA]

[+] EMBL AK120722             [CACTATGCCGTTATCCTCTCTCTCCCTCCTCCCCCTCCACCGCGCTCCGCTCCCGCCAACTTCAAATTACCCGCCACCGCCGCCTCCCTCTCGCGCCCTCCTCCTCCCCCTCCTCCGCCACTCGCCGCTCGCGCGCCGCTCGCCCGTCTCCCGGGCGCGTGCCGTAGCAGCCGACGGCATGGCCGCGGCGACCGCGGCGGCGGAGACGCCGCCCACGCTGCTCGAGTACATGGGCCAGGCTGGCGCGGCCGACGACCTCGTCGTCCTCGTGGCGCACGTCCAGAGCGCGTGCAAGCGCATCGCCGCGCTCGTGGCGTCGCCCGGGAACGCCGAGCTGTCGCGGGGGAAGGCGGGGGGTGGTGTGGCGGTGGCGGCCGGGCGGGACGCGCCCAAGCCGCTCGACGAATTGTCGAATGAGATCATCTTGTCATCACTCCGAAGATCTGGAAAGGTTGCAGTGATGGCTTCTGAAGAAAATCATCTCCCCATTTGGGTTTCCAACGACAGCCCGTATGTTGTTGTTACGGATCCGCTTGATGGTTCTCGCAACATTGAGGTATCCATTCCCACCGGAACAATATTTGGGATATACAATAGGCTGGCAGAGCTTGACCATCTACCT GAAGAGGAGAGAGCT CAGCTCAATTCACTGCAAAGCGGCACTCACCTTGTCGCTTCGGGGTATGTGCTGTATTCATCTGCCACCATATTCTGTATCAGCTTCGGTGCAGGTACCCATGGCTTCACCTTGGATCACTTGACTGGAGAATTTGTTCTAACACATCCTTCCATCCAAATACCCCCAAGAGGACAGATATATTCGGTGAATGATGCGCGGTATTTCGACTGGCCTGAGGGCCTAAGGAAGTACATTGACACGATCAGACAAGGCAAGGGACAGCATCCGAAGAAGTACTCGGCACGG TACGTGTGCTCGCTGGTTGCT GATTTCCACCGGACGCTGATATACGGCGGAGTTGCCATGAACCCCAGGGATCACCTTCGGTTGGTCTATGAAGCAAATCCTCTGAGTTTCCTTGCTGAGCAGGCAGGGGGCAGGGGTTCAGATGGCAAGAGCAGAATCCTCTCGATTCAGCCTGTGAAGCTGCACCAGAGGCTGCCATTGTTCCTGGGAGGCATGGAGGACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACAGAAGGTTAATCCTGGATATGAGGTGTGAAGATATATAACCTTAGATAATGAGGTCTGAAGATAATGTAGCATGCGAAAAGAGAACAGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACCGATGTTTTTACCTGTCAGGTTTTCT GTTTTTGTCTCC GCGACTATGCGGTTTCACTGTGTAATATAGCAGAAAAATTAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATT TATATGTAATGCAT CCTTTGGCTACATGGACAC                     ]
[+] EMBL CB680485             [                                                                          CACCGCCCCTTCCCTCTCGCGCCCTCCTCCTCCCCCTCCTCCGCCACTCGCCGCTCGCGCGCCGCTCGCCCGTCTCCCGGCCGCGTGCCGTAGCAGCCGACGGCATGGCCGCGGCGACCGCGGCGGCGGAGACGCCGCCCACGCTGCTCGAGTACATGGGCCAGGCTGGCGCGGCCGACTACCTCGTCGTCCTCGTGGCGCACGTCCAGAGCGCGTGCAAGCGCATCGCCGCGCTCGTGGCGTCGCCCGGGAACGCCGAGCTGTCGCGGGGGAAGGCGGGGGGTGGTGTGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU065758             [                                                                                                                                                                                                                                                                                                                                                                                                  gGCCCAAGCCGCTCGACGAATTGTCGAATGAGATCATCTTGTCATCACTCCGAAGATCTGGAAAGGTTGCAGTGATGGCTTCTGAAGAAAATCATCTCCCCATTTGGGTTTCCAACGACAGCCCGTATGTTGTTGTTACGGATCCGNTTGATGGTTCTCGCAACATTGAGGTATCCATTCCCACCGGAACAATATTTGGGATATACAATAGGCTGGCAGAGCTTGACCATCTACCTCCAAGAGGAGAGAGCTNCAGTTCAATTCAattgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI809839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACA CATCCGAAGAA TACTCGGCACGGTTACGTGT CTC CTGG TGCTGGATTTCCACC GAC CTGATATACGGTGGA TTCCCATGAACCCCAGGGATCA CTTC GTT GTCTATGATACAAATCCTCTGAGTTTCCTTGCTGGACAGCCAGGGGCCAGGGGTTCAGATGGCAAGAGCAGAATCCTCTCGATTCAGCCTGTGAAGCTGCACCAGAGGCTGCCATTGTTCCTGGGAGGCATGGA GACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACAGAA GTTAATCCTGGATATGAGGTGTGAAG  ATATAACCTTAGATAATGAGGTCTGAAGATAATGTAGCATGCGAAAAGAGAACAGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACC CCCTGTTTACCTGTCAGGTTTTCTGGTTTTTGTCTCC GCGACTATGCGGTTTCACTGTGTAATATAGCAGAAAAATTAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATTGGATATGTAATGCATGCCTTTGGCTACACCGCCCCTTTTATCTGGCAAAAAAAAAA]
[+] EMBL AU173977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCCTGGGAGGCATGGAGGACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACANAAGGTTAATCCTGGATATGAGGTGTGAAGATATATACCCTTAGATAATGAGGTCTGAAGATAATGTAGCATGNGAAAAGAGAACAGGGGGACCTACTGGAGAACTNTGTATTTGCAAANCCGATGTTTTTACCTGTCAGGTTTTCT GTTTTTGTCTCCAGCGNCTATCCGGTTTCTCTGTGTAATATAGCAGAAAAATTAGGNTGCNTTTCTCCCGGTACGAAATGGAAGGGNCAACACNAATT TATATGTAATGCAT CCTTTGGCTACAaaaaaaa                     ]
[+] EMBL AK058691             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGATAATGAGGTCTGAAGATAATGTAGCATGCGAAAAGAGAACAGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACCGATGTTTTTACCTGTCAGGTTTTCT GTTTTTGTCTCC GCGACTATGCGGTTTCACTGTGTAATATAGCAGAAAAATTAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATT TATATGTAATGCAT CCTTTGGCTACATGGACACTTTTATCTGca          ]


>consensus_9039#0 CACTATGCCGTTATCCTCTCTCTCCCTCCTCCCCCTCCACCGCGCTCCGCTCCCGCCAAC TTCAAATTACCCGCCACCGCCGCCTCCCTCTCGCGCCCTCCTCCTCCCCCTCCTCCGCCA CTCGCCGCTCGCGCGCCGCTCGCCCGTCTCCCGGGCGCGTGCCGTAGCAGCCGACGGCAT GGCCGCGGCGACCGCGGCGGCGGAGACGCCGCCCACGCTGCTCGAGTACATGGGCCAGGC TGGCGCGGCCGACGACCTCGTCGTCCTCGTGGCGCACGTCCAGAGCGCGTGCAAGCGCAT CGCCGCGCTCGTGGCGTCGCCCGGGAACGCCGAGCTGTCGCGGGGGAAGGCGGGGGGTGG TGTGGCGGTGGCGGCCGGGCGGGACGCGCCCAAGCCGCTCGACGAATTGTCGAATGAGAT CATCTTGTCATCACTCCGAAGATCTGGAAAGGTTGCAGTGATGGCTTCTGAAGAAAATCA TCTCCCCATTTGGGTTTCCAACGACAGCCCGTATGTTGTTGTTACGGATCCGCTTGATGG TTCTCGCAACATTGAGGTATCCATTCCCACCGGAACAATATTTGGGATATACAATAGGCT GGCAGAGCTTGACCATCTACCTGAAGAGGAGAGAGCTCAGCTCAATTCACTGCAAAGCGG CACTCACCTTGTCGCTTCGGGGTATGTGCTGTATTCATCTGCCACCATATTCTGTATCAG CTTCGGTGCAGGTACCCATGGCTTCACCTTGGATCACTTGACTGGAGAATTTGTTCTAAC ACATCCTTCCATCCAAATACCCCCAAGAGGACAGATATATTCGGTGAATGATGCGCGGTA TTTCGACTGGCCTGAGGGCCTAAGGAAGTACATTGACACGATCAGACAAGGCAAGGGACA GCATCCGAAGAAGTACTCGGCACGGTACGTGTGCTCGCTGGTTGCTGATTTCCACCGGAC GCTGATATACGGCGGAGTTGCCATGAACCCCAGGGATCACCTTCGGTTGGTCTATGAAGC AAATCCTCTGAGTTTCCTTGCTGAGCAGGCAGGGGGCAGGGGTTCAGATGGCAAGAGCAG AATCCTCTCGATTCAGCCTGTGAAGCTGCACCAGAGGCTGCCATTGTTCCTGGGAGGCAT GGAGGACATGCTTGAGTTGGAAAGCTATGGAGATGTGCAACAGAAGGTTAATCCTGGATA TGAGGTGTGAAGATATATAACCTTAGATAATGAGGTCTGAAGATAATGTAGCATGCGAAA AGAGAACAGGGGGACCTACTGGAGAACTCTGTATTTGCAAAACCGATGTTTTTACCTGTC AGGTTTTCTGTTTTTGTCTCCGCGACTATGCGGTTTCACTGTGTAATATAGCAGAAAAAT TAGGCTGCATTTCTCCCGGTACGAAATGGAAGGGACAACACAAATTTATATGTAATGCAT CCTTTGGCTACATGGACACTTTTATCTGGCAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)