These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1839 fasta sequence [AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGAGGTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAGTTTGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGCCGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTCGCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCACTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGGCGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGACCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTCGGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTGATCTGCTGCGGTGGCAGCAG-AAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGAGCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCCGGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCATCGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGCGCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCTGGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCATCCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCGCGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCACTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA] [+] EMBL AK121010 [AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGAGGTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAGTTTGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGCCGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTCGCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCACTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGGCGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGACCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTCGGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTGATCTGCTGCGGTGGCAGCAG AAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGAGCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCCGGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCATCGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGCGCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCTGGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCATCCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCGCGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGA ] [+] EMBL C91795 [ GCATNAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTTANCTGCTGCGGTGGCAGCNGAAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTNCCCGGTGCTGTNCGTGTCCAGCCCGCTGTACCTGACGGCGGCGGA CCGCNGAC TTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGNGATCGGCGANCNGTGCGC ] [+] EMBL AU172854 [ CTGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAAaaaaaa ] [+] EMBL BI795555 [ ccGGTGGCAGAAGACTGAGGCTGCCTTATCTGCTTGTGTTGCTGCTGGGACTTGGGAGTGAAGCGGTCGAGTCATGAGTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATCGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCACTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA] [-] EMBL AA750300 [ TGAGTAGAAGTCGTAAACTTGT AATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATCGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCAGTGAT ] consensusID : consensus_9048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGAGGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTTTTGGGATACCA] [+] EMBL BE229562 [CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAGCCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGAGGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTTTTGGGATACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9048#0 AGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTCCGAGG-AG 59 consensus_9048#1 -------------CGAGAAATTCATNVCCTTCTTCTGAATCTCTTCTTCCTCCGAGVGAG 47 ** ******** ***************************** ** consensus_9048#0 AGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCA 119 consensus_9048#1 AGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGACCTTCCA 107 ************************************************************ consensus_9048#0 TGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAG 179 consensus_9048#1 TGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCAG 167 ************************************************************ consensus_9048#0 CCAAGCTCCCGGAGGC--GGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGA 237 consensus_9048#1 CCAAGCTCCCGGGGGGCGGSCCGTCGCGGCCCGHAGGGCCCGCAAGAGGGGGTGGGAGGA 227 ************ ** * *********** * * * * ** * ****** consensus_9048#0 GGT-CGCGTCTT-CCGTGCAGGAGCAGGT-GCAGGCGCAGGGAGCGCAGGTGTTGGAGTT 294 consensus_9048#1 GGTTCGCGTCTTTCCCTACAGGAGCAGGTTACAGGCGCAAGGRGCCCAGSTTTTTGAGTT 287 *** ******** ** * *********** ******** ** ** *** * ** ***** consensus_9048#0 TGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGC 354 consensus_9048#1 TTGGGATACCA------------------------------------------------- 298 * ******** consensus_9048#0 CGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTC 414 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCA 474 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGG 534 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGA 594 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTC 654 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAG 714 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 TGATCTGCTGCGGTGGCAGCAGAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGG 774 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCT 834 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGA 894 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCC 954 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCAT 1014 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGC 1074 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCT 1134 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCAT 1194 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCG 1254 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGC 1314 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCT 1374 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAA 1434 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGA 1494 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGT 1554 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTGAG 1614 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 GCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGAGT 1674 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 AGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTAT 1734 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CAATCGATAGTGATCTCTGAATAAACTGAATCATCAACGAAATGATGTGCTCGTGCTGCA 1794 consensus_9048#1 ------------------------------------------------------------ consensus_9048#0 CTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAAAAAAAA 1839 consensus_9048#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||