cluster # 9055

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Oryza sativa
cluster # 9055 cluster # 9055 Sequences # 6 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9055#0 length = 636 sequences # 2
consensus_9055#1 length = 589 sequences # 1

consensus_9055#2 length = 566 sequences # 1
consensus_9055#3 length = 231 sequences # 1
consensus_9055#4 length = 102 sequences # 1

consensusID : consensus_9055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence

                              [CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGGCTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCTG-CAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGNCGGCTTCAAACTTGGCG-CCTNTTCGCCAANAAAGGCTGAAGAATCCTTTCGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGNGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS16467A            [CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGGCTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCTG CAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGNCGGCTTCAAACTTGGCG CCTNTTC                                                                                                                                                                                                                                                   ]
[+] EMBL AU089817             [                                                                                                                                                                                               GAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGG CCAGCTNGTCNAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCNCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAANAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGNTTCAACCTCGGNGCCCTTTTCGCCAANAAAGGCTGAAGAATCCTTTCGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGNGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA]




>consensus_9055#0
CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCG
GTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGG
CTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGG
CGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGG
ACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCT
CCACTGTCTCCCGGAAGGCCCCTGCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGG
CGGCGGCGNCGGCTTCAAACTTGGCGCCTNTTCGCCAANAAAGGCTGAAGAATCCTTTCG
AATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTAT
TACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTT
GNGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAAT
GTGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [CGGCGTGCCTCGCGTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCGGCGCCGCGGAGGAGGAGAAGAGCCTCCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGTGGTTTATATACTTCATACACACACATCATTTGTTATTTCTTTTCAACTCAACATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA]

[+] EMBL BI799434             [CGGCGTGCCTCGCGTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCGGCGCCGCGGAGGAGGAGAAGAGCCTCCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGTGGTTTATATACTTCATACACACACATCATTTGTTATTTCTTTTCAACTCAACATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA]




>consensus_9055#1
CGGCGTGCCTCGCGTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCA
CGAGGGGGAACCGGCGCCGCGGAGGAGGAGAAGAGCCTCCCGACTTCATCTTCGGCTTCA
TCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGC
CGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCG
CCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCT
GAAGAATCCTTTCGAATTCTACGTACGTATATACTCCACGCAGAGCGTCAGCTTGCCTAC
ACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATT
TGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTT
TTTATGTGATAATGTGGTTTATATACTTCATACACACACATCATTTGTTATTTCTTTTCA
ACTCAACATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA

consensusID : consensus_9055#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [GACGCATCACCCATCTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAACATGGGTGAATGGATTAAAAGGGTT]

[+] EMBL AK121165             [GACGCATCACCCATCTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAACATGGGTGAATGGATTAAAAGGGTT]




>consensus_9055#2
GACGCATCACCCATCTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAA
GAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATG
GCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTC
CGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGA
GGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAAT
CCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATC
GATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGG
ATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATG
TGAAAATGTGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCA
ACATGGGTGAATGGATTAAAAGGGTT

consensusID : consensus_9055#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [CNCAATGGCGGCGGCGGGCGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGATTGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGACTTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAAACCGACCCGCTGCTCAACAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT]

[+] EMBL BE228829             [CNCAATGGCGGCGGCGGGCGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGATTGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGACTTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAAACCGACCCGCTGCTCAACAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT]




>consensus_9055#3
CNCAATGGCGGCGGCGGGCGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCA
GCCGTCNCGGGTNGNGATTGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGA
AGAAAAAACCTCGCCGACTTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAA
ACCGACCCGCTGCTCAACAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT

consensusID : consensus_9055#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [CAGAGGACGAGACAAGGGGCAACATGTGACGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA766436             [CAGAGGACGAGACAAGGGGCAACATGTGACGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9055#4
CAGAGGACGAGACAAGGGGCAACATGTGACGGTGTGACTCAAAAGTGATTAATTTTTTAT
GTGATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9055#2      ------------------------------------------------------------
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCG 60
consensus_9055#1      ------------------------------------------------------------
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      --------------------------------------------------GACGCATCAC 10
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      GTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGG 120
consensus_9055#1      -----------------------------------------------CGGCGTGCCTCGC 13
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      CCATCTCATTCTCATCATCGTCGCGTGAGAGAG-AGCTAGAGCTGAGCTAAGAATCATGG 69
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      CTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGG 180
consensus_9055#1      GTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCG 73
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      CTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGC 129
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      CGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGG 240
consensus_9055#1      GCGCCGCGGAGGAGGAGAAGAGCCTCCCGAC-TTCATCTTCGGCTTCATCTTCAAGAAGG 132
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      GCCACGAGGGGGAAGCCGGCGC----CGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCT 185
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      ACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCT 300
consensus_9055#1      ACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCT 192
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      CCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 245
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      CCACTGTCTCCCGGAAGGCCCCTGC-AAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 359
consensus_9055#1      CCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 252
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      GCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTT 305
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      GCGGCGGCGNCGGCTTCAAACTTGGCGCC-TNTTCGCCAANAAAGGCTGAAGAATCCTTT 418
consensus_9055#1      GCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTT 312
consensus_9055#3      ------------------------------------------------------------
                                                                                  

consensus_9055#2      CGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGT 365
consensus_9055#4      ------------------------------------------------------------
consensus_9055#0      CGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGT 478
consensus_9055#1      CGAATTCTACGTACGTATATACTCCA-CGCAGAGCGTCAGCTTGCCTACACGATCGATGT 371
consensus_9055#3      ------------------------------------------CNCAATGGCGGCGGCGGG 18
                                                                                  

consensus_9055#2      ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGAT 425
consensus_9055#4      -------------------------------------------------CAGAGGACGAG 11
consensus_9055#0      ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGAT 538
consensus_9055#1      ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGAT 431
consensus_9055#3      CGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGAT 78
                                                                         *     ** 

consensus_9055#2      TTGCGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 482
consensus_9055#4      ------ACAAGGGGCAACATGTGAC--GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 63
consensus_9055#0      TTGNGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 595
consensus_9055#1      TTGCGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 488
consensus_9055#3      TGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGAC 138
                                *   * *   *  *   ** *       *    **  **   *    *  

consensus_9055#2      AAAATG-TGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAA 541
consensus_9055#4      ATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA--------------------- 102
consensus_9055#0      AAAATG-TGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA------------------ 636
consensus_9055#1      ATAATG-TGGTTTATATACTTCATACA-CACACATCATTTGTTATTTCTTTTCAACTCAA 546
consensus_9055#3      TTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAA-ACCGACCCGCTGCTCAA 197
                         **  * *  *  **     * * *    *                            

consensus_9055#2      CATGGGTGAATGGATTAAAAGGGTT------------------ 566
consensus_9055#4      -------------------------------------------
consensus_9055#0      -------------------------------------------
consensus_9055#1      CATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA 589
consensus_9055#3      CAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT--------- 231