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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 3081 fasta sequence
[CCCCAACGGAGGAGGAAGGGAAGAAGGGAGGAAACCCTAAAATTCCTCTTCTCCTTCTGCTCTCGATTCGATTCGATCTCGTCGCCACGCCCCCGCCCCCGCCCCCGCCCCGCCCCGCAAGCCGCCGATCTGTTGCGCCTCGTCAAGACCCCCCAGCCCAAGATCTGATTCGTTTCGATTCCGAGCTGAGCAGCAGCAGGAGCAGGAGGAGGAGGAGGAGCTCATCGATTTGGTGGTTGCTGATGGGCGGCGCATCCATGTTGGATGAGGAAGCGCACTGCATCTGATCGCATTCGGGTCCCCTCCAGCAACCCCGCGCCATCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGGAACCTGCCGTGCCCATGCCGCATGTTGGGGCCCGCCGCTCCACGCGCGTCTTCGTGCCCAAGACGCCCAGGCCGCCTCAGCCTTCTGATCCTGCCAGGGTCCTCCGCTCCGGCAAGCGCCTCGCCTTCTCCGAATCCCCCGCCGACGCCCACTGGTTCCAGTGCAAGCCCAACAACTGCTTCCACGTCCATGACCACCAACGCCAACTTCACGACGACCCCAAGCCACCGCCGCCGCCTCTGCCGCGCACAAGGTCCTTCGGGATCGTCTACAGCAGGAAGCGCCGCCGCCGCCTCCCCGAACCCAAGGAGGACACCAGGTTTGCCATTGTCTTCACTAGGAAGAGACCCAAGGTCGCCCCTTTTCAGCACCACGCCCCGAACGACCTTGCCACCATCCCATGCTCCTCTTCCAGGGAGTTTGCCTCCAGGACTGGCTTCTTTGATTCCCATTTCTTGACCCTGGTGGATTGTATTCCCACTAATAAAGCTGACGCTGCCATGCTTATTGTCCTTGTGGATTCATCTTGCTCTGGGAGCTCTCAGCACTTCTTGCGCCTCCTCCTCTCTGTGCTGCGCTGGATGCGTAGCTGCCGACGGGGCAAGGTCCGAAACCTTGCCTCCTTTCTCTCGTCCGATGCTGTCGCCACTGCGCTTGCATTGCGGGGATTGCATTTTGTCCAGCTTCAATGCCGGAGAGACTGTGCATTGTCACAGAGGGCTTTGGTGCAATGTGGCTGGTGTGAGCTTCGTGGTGCCAAGGATTCTGAACCATTGTTGTCTGTCAATTTCTTGGCAGTCCCTTCTTACTTCCAGATTTTGCACTTGTTAATAGCACTCGAGTCAATGTATCTTCCAGCTGTGATTCGTACGAGAATGCATTTGGTTGGTGGAGCTGAAGAAATTTATCCTCGCACCCTATTGGAGGAGGATTCTGAATCTCTGAGCACTGGGGATACTGATCCTGCTGTTGACCTGTGTAGCAACAAACTTTGCAGTGTGGCTCAAGATTATGTGCCCCTTGAAGAGATTGCAGGAGTGGTGGTCCATGGTCTGAGGCTAAAGAAGCATCAAAGGAAGAGAAGCTCTATGCGGCATCCCCTCAGTCGACAGCGTCTTGCTGCAAGATTTCCCGACAAGGTAGTTGCAACAAACCAGACCGATGTGGCTAGACAGACAGAAGCGGATGCGCCACCCTCAGTTAGTCCGGAGCTTCCACTGGAGCCTGTCAAACCTAAAGCAGCACTGGAAATCTCTCTTGATTTGCTTGAAAACATGGATGACAGTGATGTTTCAACTCCTATAGGATCAAATGGGAAGCAAAAGAGGTCTTCTTTGAAAAGTCCCATTGAGCGCATGAATGAAAGGTTGGCTTTGGCTGAGGTTAGACAGAATATAGATTCTGTTCACTGCAGAGCAAACCTTTTAATTATTCAACCTGATAGGTGCTGGAGGGAAGAAGGCGCTGAAGTTATGCTGGAACCATCGGAATCAAATGAGTGGTGTATAGCTGTGAAGATACATGGTGTCAATAGAATATCTCTGAAGCCTTCGGAGCAGAGGTTTTATGTTGTTAACCGGTTCACCCATGCCTATATTTTGGCAGTTGATGATGGATTGAAGATTGAGTTCTCTGATAAATGGGACTGGCTTTTGTTTAAGGAGTTGCAAATTGAGGGTCGGGAGCGCAATTCCCAGGGAAAGATGATACCAATTCCTGGTGTAAATGAGGTTTCTGATGACATGGGAGTGATTGGAACATATCCTTTTTCACGCCCTGTGCCAGACTATATCAGAATGGCGGATGATGAGGTTGGGCGAGCTCTCTCAAGGGACTCTGTATATGATCTGGATTCTGAGGATGAACAGTGGCTCACCCAGTTGAATCATTCAGATTCTGACAGAAAAAGCGCACATCTTAATCATATTTCTTATGAAGATTTTGAAAAGATGATTACCACGTTTGAAAAGGATGCTTTCAACAACCCTGAAGGAACTAGTGATTTGGATCAGATTCTTTCCAGATACCCTACTTTGGAAAAGGACCATAATGTCCTTGCTGTGCATGAATATTGGATAAACAAGAGATATAAGAAAGGTGTACCACTGCTAAGGATATTGCAGGGTGCAACACTAAGACGAGGACAACTGTCACAAAGATCTATTAAGAAAAAAAGATCTTTCAAGAGACA-AAGAAGCCAAGCTGGCCGTGGAAAGCCTGACATATGCTTGCAAGATGCTAATGGTGCTGAAGAGGAGGCTTTGCGGAGAGTTGTGGAAGCCGAACGTGCTGCAACACAGGCAGGAGAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTATTATGGCCCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGTGAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAATGCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCTTTTTTCCTCCCCACCTGTTTTAACTTTGTGAAGCCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAATCTCTTGTGTACATGATAGTGGTTAGTTAGA-TTGTGGTGTATCTTTTCTGTAAAAAAAAAA]
[+] EMBL AK121311 [CCCCAACGGAGGAGGAAGGGAAGAAGGGAGGAAACCCTAAAATTCCTCTTCTCCTTCTGCTCTCGATTCGATTCGATCTCGTCGCCACGCCCCCGCCCCCGCCCCCGCCCCGCCCCGCAAGCCGCCGATCTGTTGCGCCTCGTCAAGACCCCCCAGCCCAAGATCTGATTCGTTTCGATTCCGAGCTGAGCAGCAGCAGGAGCAGGAGGAGGAGGAGGAGCTCATCGATTTGGTGGTTGCTGATGGGCGGCGCATCCATGTTGGATGAGGAAGCGCACTGCATCTGATCGCATTCGGGTCCCCTCCAGCAACCCCGCGCCATCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGGAACCTGCCGTGCCCATGCCGCATGTTGGGGCCCGCCGCTCCACGCGCGTCTTCGTGCCCAAGACGCCCAGGCCGCCTCAGCCTTCTGATCCTGCCAGGGTCCTCCGCTCCGGCAAGCGCCTCGCCTTCTCCGAATCCCCCGCCGACGCCCACTGGTTCCAGTGCAAGCCCAACAACTGCTTCCACGTCCATGACCACCAACGCCAACTTCACGACGACCCCAAGCCACCGCCGCCGCCTCTGCCGCGCACAAGGTCCTTCGGGATCGTCTACAGCAGGAAGCGCCGCCGCCGCCTCCCCGAACCCAAGGAGGACACCAGGTTTGCCATTGTCTTCACTAGGAAGAGACCCAAGGTCGCCCCTTTTCAGCACCACGCCCCGAACGACCTTGCCACCATCCCATGCTCCTCTTCCAGGGAGTTTGCCTCCAGGACTGGCTTCTTTGATTCCCATTTCTTGACCCTGGTGGATTGTATTCCCACTAATAAAGCTGACGCTGCCATGCTTATTGTCCTTGTGGATTCATCTTGCTCTGGGAGCTCTCAGCACTTCTTGCGCCTCCTCCTCTCTGTGCTGCGCTGGATGCGTAGCTGCCGACGGGGCAAGGTCCGAAACCTTGCCTCCTTTCTCTCGTCCGATGCTGTCGCCACTGCGCTTGCATTGCGGGGATTGCATTTTGTCCAGCTTCAATGCCGGAGAGACTGTGCATTGTCACAGAGGGCTTTGGTGCAATGTGGCTGGTGTGAGCTTCGTGGTGCCAAGGATTCTGAACCATTGTTGTCTGTCAATTTCTTGGCAGTCCCTTCTTACTTCCAGATTTTGCACTTGTTAATAGCACTCGAGTCAATGTATCTTCCAGCTGTGATTCGTACGAGAATGCATTTGGTTGGTGGAGCTGAAGAAATTTATCCTCGCACCCTATTGGAGGAGGATTCTGAATCTCTGAGCACTGGGGATACTGATCCTGCTGTTGACCTGTGTAGCAACAAACTTTGCAGTGTGGCTCAAGATTATGTGCCCCTTGAAGAGATTGCAGGAGTGGTGGTCCATGGTCTGAGGCTAAAGAAGCATCAAAGGAAGAGAAGCTCTATGCGGCATCCCCTCAGTCGACAGCGTCTTGCTGCAAGATTTCCCGACAAGGTAGTTGCAACAAACCAGACCGATGTGGCTAGACAGACAGAAGCGGATGCGCCACCCTCAGTTAGTCCGGAGCTTCCACTGGAGCCTGTCAAACCTAAAGCAGCACTGGAAATCTCTCTTGATTTGCTTGAAAACATGGATGACAGTGATGTTTCAACTCCTATAGGATCAAATGGGAAGCAAAAGAGGTCTTCTTTGAAAAGTCCCATTGAGCGCATGAATGAAAGGTTGGCTTTGGCTGAGGTTAGACAGAATATAGATTCTGTTCACTGCAGAGCAAACCTTTTAATTATTCAACCTGATAGGTGCTGGAGGGAAGAAGGCGCTGAAGTTATGCTGGAACCATCGGAATCAAATGAGTGGTGTATAGCTGTGAAGATACATGGTGTCAATAGAATATCTCTGAAGCCTTCGGAGCAGAGGTTTTATGTTGTTAACCGGTTCACCCATGCCTATATTTTGGCAGTTGATGATGGATTGAAGATTGAGTTCTCTGATAAATGGGACTGGCTTTTGTTTAAGGAGTTGCAAATTGAGGGTCGGGAGCGCAATTCCCAGGGAAAGATGATACCAATTCCTGGTGTAAATGAGGTTTCTGATGACATGGGAGTGATTGGAACATATCCTTTTTCACGCCCTGTGCCAGACTATATCAGAATGGCGGATGATGAGGTTGGGCGAGCTCTCTCAAGGGACTCTGTATATGATCTGGATTCTGAGGATGAACAGTGGCTCACCCAGTTGAATCATTCAGATTCTGACAGAAAAAGCGCACATCTTAATCATATTTCTTATGAAGATTTTGAAAAGATGATTACCACGTTTGAAAAGGATGCTTTCAACAACCCTGAAGGAACTAGTGATTTGGATCAGATTCTTTCCAGATACCCTACTTTGGAAAAGGACCATAATGTCCTTGCTGTGCATGAATATTGGATAAACAAGAGATATAAGAAAGGTGTACCACTGCTAAGGATATTGCAGGGTGCAACACTAAGACGAGGACAACTGTCACAAAGATCTATTAAGAAAAAAAGATCTTTCAAGAGACA AAGAAGCCAAGCTGGCCGTGGAAAGCCTGACATATGCTTGCAAGATGCTAATGGTGCTGAAGAGGAGGCTTTGCGGAGAGTTGTGGAAGCCGAACGTGCTGCAACACAGGCAGGAGAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTATTATGGCCCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGTGAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAATGCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCTTTTTTCCTCCCCACCTGTTTTAACTTTGTGAAGCCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAATCTCTTGTGTACATGATAGTGGTTAGTTA ]
[+] EMBL CB665446 [ AAAATTCCTCTTCTCCTTCTGCTCTCGATTCGATTCGATCTCGTCGCCACGCCCCCGCCCCCGCCCCCGCCCCGCCCCGCAAGCCGCCGATCTGTTGCGCCTCGTCAAGACCCCCCAGCCCAAGATCTGATTCGTTTCGATTCCGAGCTGAGCAGCAGCAGGAGCAGGAGGAGGAGGAGGAGCTCATCGATTTGGTGGTTGCTGATGGGCGGCGCATCCATGTTGGATGAGGAAGCGCACTGCATCTGATCGCATTCGGGTCCCCTCCAGCAACCCCGCGCCATCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGGAGGAACCTGCCGTGCCCATGCCGCATGTTGGGGCCCGCCGCTCCACGCGCGTCTTCGTGCCCAAGACGCCCAGGCCGCCTCAGCCTTCTGATCCTGCCAGGGTCCTCCGCTCCGGCAAGCGCCTCGCCTTCTCCGAATCCCCCGCCGACGCCCACTGGTTCCAGTGCAAGCCCAACAACTGCTTCCACGTCCATGACCACCAACGCCAACTTCACGACGACCCCAAGCCACCGCCGCCGCCTCTGCCGCGCACAAGGTCCTTCGGGATCGTCTACAGCAGGAAGCGCCGCCGCCGCCTCCCCGAACCCAAGGAGGACACCAGGTTTGCCATTGTCTTCACTAGGAAGAGACCCAAGGTCGCCCCTTTTCAGCACCACGCCCCGAACGACCTTGCCACCATCCCATGCTCCTCTTCCAGGGAGTNTGCCTCCAGGACTGGCTTCTGTGATTCCCATTTCTTGACCCTGGTGGATTG ]
[+] EMBL CB658850 [ GAAGCGCCGCCGCCGCCTCCCCGAACCCAAGGAGGACACCAGGTTTGCCATTGTCTTCACTAGGAAGAGACCCAAGGTCGCCCCTTTTCAGCACCACGCCCCGAACGACCTTGCCACCATCCCATGCTCCTCTTCCAGGGAGTTTGCCTCCAGGACTGGCTTCTTTGATTCCCATTTCTTGACCCTGGTGGATTGTATTCCCACTAATAAAGCTGACGCTGCCATGCTTATTGTCCTTGTGGATTCATCTTGCTCTGGGAGCTCTCAGCACTTCTTGCGCCTCCTCCTCTCTGTGCTGCGCTGGATGCGTAGCTGCCGACGGGGCAAGGTCCGAAACCTTGCCTCCTTTCTCTCGTCCGATGCTGTCGCCACTGCGCTTGCATTGCGGGGATTGCATTTTGTCCAGCTTCAATGCCGGAGAGACTGTGCATTGTCACAGAGGGCTTTGGTGCAATGTGGCTGGTGTGAGCTTCGTGGTGCCAAGGATTCTGAACCATTGTTGTCTGTCAATTTCTTGGCAGTCCCTTCTTACTTCCAGATTTTGCACTTGTTAATAGCACTCGAGTCAATGTATCTTCCAGCTGTGATTCGTACGAGAATGCATTTGGTTGGTGGAGCTGAAGAAATTTATCCTCGCACCCTATTGGAGGAGGATTCTGAATCTCTGAGCACTGGGGATACTGATCCTGCTGTTGACCTGTGTAGCAACAAACTTTGCAGTGTGGCTCAAGATTATGTGCCCCTTGAAGAGATTGCAGGAGTGGTGG ]
[-] EMBL CB658851 [ GTGGCTCACCCAGTTGAATCATTCAGATTCTGACAGAAAAAGCGCACATCTTAATCATATTTCTTATGAAGATTTTGAAAAGATGATTACCACGTTTGAAAAGGATGCTTTCAACAACCCTGAAGGAACTAGTGATTTGGATCAGATTCTTTCCAGATACCCTACTTTGGAAAAGGACCATAATGTCCTTGCTGTGCATGAATATTGGATAAACAAGAGATATAAGAAAGGTGTACCACTGCTAAGGATATTGCAGGGTGCAACACTAAGACGAGGACAACTGTCACAAAGATCTATTAAGAAAAAAAGATCTTTCAAGAGACA AAGAAGCCAAGCTGGCCGTGGAAAGCCTGACATATGCTTGCAAGATGCTAATGGTGCTGAAGAGGAGGCTTTGCGGAGAGTTGTGGAAGCCGAACGTGCTGCAACACAGGCAGGAGAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTATTATGGCCCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGTGAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAATGCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCTTTTTTCCTCCCCACCTGTTTTAACTTTGTGAAGCCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAATATGTTGTGTACATGATAGTGGTTAGTTAGA TTGTG ]
[-] EMBL CB665447 [ TTCAGATTCTGACAGAAAAAGCGCACATCTTAATCATATTTCTTATGAAGATTTTGAAAAGATGATTACCACGTTTGAAAAGGATGCTTTCAACAACCCTGAAGGAACTAGTGATTTGGATCAGATTCTTTCCAGATACCCTACTTTGGAAAAGGACCATAATGTCCTTGCTGTGCATGAATATTGGATAAACAAGAGATATAAGAAAGGTGTACCACTGCTAAGGATATTGCAGGGTGCAACACTAAGACGAGGACAACTGTCACAAAGATCTATTAAGAAAAAAAGATCTTTCAAGAGACA AAGAAGCCAAGCTGGCCGTGGAAAGCCTGACATATGCTTGCAAGATGCTAATGGTGCTGAAGAGGAGGCTTTGCGGAGAGTTGTGGAAGCCGAACGTGCTGCAACACAGGCAGGAGAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTATTATGGCCCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGTGAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAATGCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCGGGTTTCCTCCCCACCTGTTTTAACTTTGTGAAGCCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAATTACGGGTGTACATGATAGTGGTTAG ]
[+] EMBL BQ906422 [ TCAAGAGACACAAGAAGCCAAGCTGCCCGTGGAAAGCCTGACATATGCTTGCAAGATGCTAATGGTGCTGAAGAGGAGGCTTTGCGGAGAGTTGTGGAAGCCGAACGTGCTGCAACACAGGCAGGAGAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTGTTATGGCCCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGTGAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAATGCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCTTTTTTCCTCCCCACCTGTTTTAACTTTGTGAAGCCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAATCTCTTGTGTACATGATAGTGGTTAGTTAGACTTGT GTGTATCTTTTCTGTAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||