Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9067 cluster # 9067       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9067#0 length = 2279 sequences # 6  

consensusID : consensus_9067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2279
fasta sequence
                              [GATCCAACGGCGCGCGCAGTTGCCTCTGGAAGACCGAAGCGAACCCGGCTCCTCACATACCGCACACCTCGCCACGAAACGCCGGAAACCCCCTCCGCCGCCGCCGCCTCCTCCTCCTCCTACCAGATGGCGGCGGCCTCGCCGGAGAGCAGGCCTCCTCGCTCGCTCTTCGACCTCCCCGCGGACTTCTTCGATTCTTCTTCCCTCCTCGGATCCCACCCTTCCTCGGCCCCCTCTGCGGCGGAACCGTCCGAGTCCATCCGGCCGGCGGCGGCCCCGCCTCTATCGCAGCCGTCGGAGGCTCCGGGGTTGAGGTGGACATGCAACACCTGCGCCTCTGAATTCGAGTCGCTGCAGGAACAGCGCGAGCACTTCAAGTCTGATCTCCATCGCCTCAACGTCAAGCTGAGCATTGCTGGTAAAACTATTATCAAGGAAGATGACTTAGACAAAGCAGATCCCGATTCTCTGTTCGATGATTTGGAGGTATCTAGTGTATCTGGATCAGAGGATGAACTTGAAAATGGGCCTGCATCAGATCGTGGTCTCTCAGCCAAAGACAAGGGAGAATTCAGGAAGAAACTTTATTTTCGCTGTCATTCTGGTGACACAGTTTCTATCTGGAGATGCATACTGTTGAAAGAACATGAAGAGCCAGTTTTCAATAGCAAGTCTGGTCAGACAGAAAGTCATGGATCTACACCATTTGTACAAGAGGATGAAATGCTAAATAGAGTGAAGAATTTGACATCTGAGCCTCGTGATGCATCACGTTTGAGGATCATTCTACTAACAAGTGGTGGACATTTTGCTGGATGTGTTTTTGATGGAAACTCAGTCATAGCCCATAAAACATTTCATAGGTATGTTGTAAGGGCAAAGGCTGGAAAGAGGCAGTCTGGGAAAGATGCTACTGGGAAGGTTGCACATTCAGCAGGCTCATCTCTTCGCCGTTATAATGAAGCGGCATTGAAAAAGGAAATTCAAGAATTAATAGCTTCTTGGAAGTCATACTTTGACCTTTGTGTCTGTGTCTTTATGTATGCTCCGTCAAAGAACCGTCAAATGCTCTTTGATGGGGATAAGACTCAGTCGGTATTGCAGGCTTGTGATATTCGTCCAATCCCATTGACTGTTCATCGGCCCACCTTGAAGGAAGCAAAACGGTTATATACTAACCTAACACAGCTCTGTTATGAGATGGAATGCTTGAGTACGGATGAACCCCATGTAGAGGATGTGACAAGTTTTGAACAAAGTAAAGAGGCAAAGCAGAAAAAAATTATGGATTCTGAGGAATCTATTTCTGTCTCGTCCTTAAGTTTGGACTTGCCAAATAAGCACGAAGGGACATCCATACATCCATCTAATAATGAAACAACGCCTCTTCACGAAGCGGCAAAGTCTGGCAATGCTCAGCAAACACTGGAGTTGCTTGAGCAGGGTTTGGATCCTTGTATTAAAGATGCAAGAGGAAAAACACCTTACTTGCTGGCTTCGGACAAAGAAGTTAGAAATACATTCAGAAGATTTATGGCACTCAACCTAGACAAATGGGATTGGCATGCGGCTGATGTGCCTAGTGCACTAACAAAGGAAATGGAAGAATCACAAGCTGCAAAGCAGGCAGAGAAGGATGCCAAGAAGAAGGCAAGAGCAAAGGAACTGAAGAAATTGAAGAAAGCAAGAGAAAAGGAAAAGGAGAAAGAAAAAGAAAAGGCACAAGCATCACAGTCCCAAAGGACCCAATCTAATGTAAGAGGCACTTCAGCTGGTCAAATGGCCAATGCAACTGCTTCTATGCCAGGCCTGAAACAAAAGCATCAGCTGCCCCAGCCTACGGCACTTTCGAAAGAGGAGGAACGACAAAGGAAACTCGCCGAGGAAAGAGAGAAAAGAGCAGCC-GCA-GCCGAAAGAAGA-TTTGCGG-CTCTGGCGGCACAATCAA-GTAG-CA-CATCAGGGACAGCAGCAGCAGAACATCCCCCA--CAGAGAGCAGCCGCGG-CAGACGATACTTCTTGTTCGTGCTGTTTTTCTTCCTTGGTCGGCAAAGTACCATTCCACAGGTACAATTA-CAAGTACTGCAGCACCACATGTATGCATCT-TCATTCAGAAATGCTGGAAGATGATTGAGGAAATCAGGAAATTGTATGACGAGAGACATGAGATTTAATTATACCTTTCACCTGTTTTTCTTATGCATGAGATTCAATAACAGGTCTATCTACCAGTCTTGCTTAATCTTTAGCTAATCCGAATCTTGTTACAAATTTCCAAAAAAAAAA]

[+] EMBL AK121410             [GATCCAACGGCGCGCGCAGTTGCCTCTGGAAGACCGAAGCGAACCCGGCTCCTCACATACCGCACACCTCGCCACGAAACGCCGGAAACCCCCTCCGCCGCCGCCGCCTCCTCCTCCTCCTACCAGATGGCGGCGGCCTCGCCGGAGAGCAGGCCTCCTCGCTCGCTCTTCGACCTCCCCGCGGACTTCTTCGATTCTTCTTCCCTCCTCGGATCCCACCCTTCCTCGGCCCCCTCTGCGGCGGAACCGTCCGAGTCCATCCGGCCGGCGGCGGCCCCGCCTCTATCGCAGCCGTCGGAGGCTCCGGGGTTGAGGTGGACATGCAACACCTGCGCCTCTGAATTCGAGTCGCTGCAGGAACAGCGCGAGCACTTCAAGTCTGATCTCCATCGCCTCAACGTCAAGCTGAGCATTGCTGGTAAAACTATTATCAAGGAAGATGACTTAGACAAAGCAGATCCCGATTCTCTGTTCGATGATTTGGAGGTATCTAGTGTATCTGGATCAGAGGATGAACTTGAAAATGGGCCTGCATCAGATCGTGGTCTCTCAGCCAAAGACAAGGGAGAATTCAGGAAGAAACTTTATTTTCGCTGTCATTCTGGTGACACAGTTTCTATCTGGAGATGCATACTGTTGAAAGAACATGAAGAGCCAGTTTTCAATAGCAAGTCTGGTCAGACAGAAAGTCATGGATCTACACCATTTGTACAAGAGGATGAAATGCTAAATAGAGTGAAGAATTTGACATCTGAGCCTCGTGATGCATCACGTTTGAGGATCATTCTACTAACAAGTGGTGGACATTTTGCTGGATGTGTTTTTGATGGAAACTCAGTCATAGCCCATAAAACATTTCATAGGTATGTTGTAAGGGCAAAGGCTGGAAAGAGGCAGTCTGGGAAAGATGCTACTGGGAAGGTTGCACATTCAGCAGGCTCATCTCTTCGCCGTTATAATGAAGCGGCATTGAAAAAGGAAATTCAAGAATTAATAGCTTCTTGGAAGTCATACTTTGACCTTTGTGTCTGTGTCTTTATGTATGCTCCGTCAAAGAACCGTCAAATGCTCTTTGATGGGGATAAGACTCAGTCGGTATTGCAGGCTTGTGATATTCGTCCAATCCCATTGACTGTTCATCGGCCCACCTTGAAGGAAGCAAAACGGTTATATACTAACCTAACACAGCTCTGTTATGAGATGGAATGCTTGAGTACGGATGAACCCCATGTAGAGGATGTGACAAGTTTTGAACAAAGTAAAGAGGCAAAGCAGAAAAAAATTATGGATTCTGAGGAATCTATTTCTGTCTCGTCCTTAAGTTTGGACTTGCCAAATAAGCACGAAGGGACATCCATACATCCATCTAATAATGAAACAACGCCTCTTCACGAAGCGGCAAAGTCTGGCAATGCTCAGCAAACACTGGAGTTGCTTGAGCAGGGTTTGGATCCTTGTATTAAAGATGCAAGAGGAAAAACACCTTACTTGCTGGCTTCGGACAAAGAAGTTAGAAATACATTCAGAAGATTTATGGCACTCAACCTAGACAAATGGGATTGGCATGCGGCTGATGTGCCTAGTGCACTAACAAAGGAAATGGAAGAATCACAAGCTGCAAAGCAGGCAGAGAAGGATGCCAAGAAGAAGGCAAGAGCAAAGGAACTGAAGAAATTGAAGAAAGCAAGAGAAAAGGAAAAGGAGAAAGAAAAAGAAAAGGCACAAGCATCACAGTCCCAAAGGACCCAATCTAATGTAAGAGGCACTTCAGCTGGTCAAATGGCCAATGCAACTGCTTCTATGCCAGGCCTGAAACAAAAGCATCAGCTGCCCCAGCCTACGGCACTTTCGAAAGAGGAGGAACGACAAAGGAAACTCGCCGAGGAAAGAGAGAAAAGAGCAGCC GCA GCCGAAAGAAGA TTTGCGG CTCTGGCGGCACAATCAA GTAG CA CATCAGGGACAGCAGCAGCAGAACATCCCCCA  CAGAGAGCAGCCGCGG CAGACGATACTTCTTGTTCGTGCTGTTTTTCTTCCTTGGTCGGCAAAGTACCATTCCACAGGTACAATTA CAAGTACTGCAGCACCACATGTATGCATCT TCATTCAGAAATGCTGGAAGATGATTGAGGAAATCAGGAAATTGTATGACGAGAGACATGAGATTTAATTATACCTTTCACCTGTTTTTCTTATGCATGAGATTCAATAACAGGTCTATCTACCAGTCTTGCTTAATCTTTAGCTAATCCGAATCTTGTT                    ]
[+] EMBL AU174642             [                                                                                                        CGCCTCCTCCTCCTCCTACCAGATGGCGGCGGCCTCGCCGGAGAGCAGGCCTCCTCGCTCGCTCTTCGACCTCCCCGCGGACTTCTTCGATTCTTCTTCCCTCCTCGGATCCCACCCTTCCTCGGCCCCCTCTGCGGCGGAACCGTCCGAGTCCATCCGGCCGGCGGCGGCCCCGCCTCTATCGCAGCCGTCGGAGGCTCCGGGGTTGAGGTGGACATGCAACACCTGCGCCTCTGAATTCGAGTCGCTGCAGGAACAGCGCGAGCACTTCAAGTCTGATCTCCATCGCCTCAACGTCAAGCTGAGCATTGCTGGTAAAACTATTATCAAGGAAGATGACTTAGACAAAGCAGATCCCGATTCTCTGTTCGATGATTTGGAGGTATCTAGTGTATCTGGATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB671080             [                                                                                                                  TCCTCCTACCAGATGGCGGCGGCCTCGCCGGAGAGCAGGCCTCCTCGCTCGCTCTTCGACCTCCCCGCGGACTTCTTCGATTCTTCTTCCCTCCTCGGATCCCACCCTTCCTCGGCCCCCTCTGCGGCGGAACCGTCCGAGTCCATCCGGCCGGCGGCGGCCCCGCCTCTATCGCAGCCGTCGGAGGCTCCGGGGTTGAGGTGGACATGCAACACCTGCGCCTCTGAATTCGAGTCGCTGCAGGAACAGCGCGAGCACTTCAAGTCTGATCTCCATCGCCTCAACGTCAAGCTGAGCATTGCTGGTAAAACTATTATCAAGGAAGATGACTTAGACAAAGCAGATCCCGATTCTCTGTTCGATGATTTGGAGGTATCTAGTGTATCTGGATCAGAGGATGAACTTGAAAATGGGCCTGCATCAGATCGTGGTCTCTCAGCCAAAGACAAGGGAGAATTCAGGAAGAAACTTTATTTTCGCTGTCATTCTGGTGACACAGTTTCTATCTGGAGATGCATACTGTTGAAAGAACATGAAGAGCCAGTTTTCAATAGCAAGTCTGGTCAGACAGAAAGTCATGGATCTACACCATTTGTACAAGAGGATGAAATGCTAAATAGAGTGAAGAATTTGACATCTGAGCCTCGTGATGCATCACGTTTGAGGATCATTCTACTAACAAGTGGTGGACATTTTGCTGGATGTGTTTTTGATGGAAACTCAGTCATAGCCCATAAAACATTTCATAGGTATGTTGTAAGGGC AAGGCTGGAAAGAGGCAGTCTGGG AAGATGCTACTGGGAAGGgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF312451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     atTTGCTTGAGCAGGGTTTGGATCCTTGTATTAAAGATGCAAGAGGAAAAACACCTTACTTGCTGGCTTCGGACAAAGAAGTTAGAAATACATTCAGAAGATTTATGGCACTCAACCTAGACAAATGGGATTGGCATGCGGCTGATGTGCCTAGTGCACTAACAAAGGAAATGGAAGAATCACAAGCTGCAAAGCAGGCAGAGAAGGATGCCAAGAAGAAGGCAAGAGCAAAGGAACTGAAGAAATTGAAGAAAGCAAGAGAAAAGGAAAAGGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB671081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAGGGTTTGGATCCTTGTATTAAAGATGCAAGAGGAAAAACACCTTACTTGCTGGCTTCGGACAAAGAAGTTAGAAATACATTCAGAAGATTTATGGCACTCAACCTAGACAAATGGGATTGGCATGCGGCTGATGTGCCTAGTGCACTAACAAAGGAAATGGAAGAATCACAAGCTGCAAAGCAGGCAGAGAAGGATGCCAAGAAGAAGGCAAGAGCAAAGGAACTGAAGAAATTGAAGAAAGCAAGAGAAAAGGAAAAGGAGAAAGAAAAAGAAAAGGCACAAGCATCACAGTCCCAAAGGACCCAATCTAATGTAAGAGGCACTTCAGCTGGTCAAATGGCCAATGCAACTGCTTCTATGCCAGGCCTGAAACAAAAGCATCAGCTGCCCCAGCCTACGGCACTTTCGAAAGAGGAGGAACGACAAAGGAAACTCGCCGAGGAAAGAGAGAAAAGAGCAGCC GCA GCCGAAAGAAGA TTTGCGG CTCTGGCGGCACAATCAA GTAG CA CATCAGGGACAGCAGCAGCAGAACATCCCCCA  CAGAGAGCAGCCGCGG CAGACGATACTTCTTGTTCGTGCTGTTTTTCTTCCTTGGTCGGCAAAGTACCATTCCACAGGTACAATTA CAAGTACTGCAGCACCACATGTATGCATCT TCATTCAGAAATGCTGGAAGATGATTGAGGAAATCAGGAAATTGTATGACGAGAGACATGAGATTTAATTATGCCTTTCACCTGTTTTTCTTATGCATGAGATTC                                                                           ]
[+] EMBL BI805214             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGAG AAAGAGCATCCTGCATGCCGAAAGAAGAGTTTGCGGTGTCTGGCGGCACAATCAAGGTAGTCATCATCAGGGACAGCAGCAGCAGAACATCCCCCATGCAGAGAGCAGCCGCGGTCAGACGATACTTCTTGTTCGTGCTGTTTTTCTTCCTT GTCGGC AAGTACCATTCCACAGGTACAGTTAGCAAGTACTGCAGCACCACATGTAGGCATCTGTCATTCAGAAATGCTGGAAGATGATTGAGGAAATCAGGAAATTGTATGACGAGAGACATGAGATTTAATTATACCTTTCACCTGTTTTTCTTATGCATGAGATTCAATAACAGGTCTATCTACCAGTCTTGCTTAATCTTTAGCTAATCCGAATCTTGTTACAAATTTCCAAAAAAAAAA]


>consensus_9067#0 GATCCAACGGCGCGCGCAGTTGCCTCTGGAAGACCGAAGCGAACCCGGCTCCTCACATAC CGCACACCTCGCCACGAAACGCCGGAAACCCCCTCCGCCGCCGCCGCCTCCTCCTCCTCC TACCAGATGGCGGCGGCCTCGCCGGAGAGCAGGCCTCCTCGCTCGCTCTTCGACCTCCCC GCGGACTTCTTCGATTCTTCTTCCCTCCTCGGATCCCACCCTTCCTCGGCCCCCTCTGCG GCGGAACCGTCCGAGTCCATCCGGCCGGCGGCGGCCCCGCCTCTATCGCAGCCGTCGGAG GCTCCGGGGTTGAGGTGGACATGCAACACCTGCGCCTCTGAATTCGAGTCGCTGCAGGAA CAGCGCGAGCACTTCAAGTCTGATCTCCATCGCCTCAACGTCAAGCTGAGCATTGCTGGT AAAACTATTATCAAGGAAGATGACTTAGACAAAGCAGATCCCGATTCTCTGTTCGATGAT TTGGAGGTATCTAGTGTATCTGGATCAGAGGATGAACTTGAAAATGGGCCTGCATCAGAT CGTGGTCTCTCAGCCAAAGACAAGGGAGAATTCAGGAAGAAACTTTATTTTCGCTGTCAT TCTGGTGACACAGTTTCTATCTGGAGATGCATACTGTTGAAAGAACATGAAGAGCCAGTT TTCAATAGCAAGTCTGGTCAGACAGAAAGTCATGGATCTACACCATTTGTACAAGAGGAT GAAATGCTAAATAGAGTGAAGAATTTGACATCTGAGCCTCGTGATGCATCACGTTTGAGG ATCATTCTACTAACAAGTGGTGGACATTTTGCTGGATGTGTTTTTGATGGAAACTCAGTC ATAGCCCATAAAACATTTCATAGGTATGTTGTAAGGGCAAAGGCTGGAAAGAGGCAGTCT GGGAAAGATGCTACTGGGAAGGTTGCACATTCAGCAGGCTCATCTCTTCGCCGTTATAAT GAAGCGGCATTGAAAAAGGAAATTCAAGAATTAATAGCTTCTTGGAAGTCATACTTTGAC CTTTGTGTCTGTGTCTTTATGTATGCTCCGTCAAAGAACCGTCAAATGCTCTTTGATGGG GATAAGACTCAGTCGGTATTGCAGGCTTGTGATATTCGTCCAATCCCATTGACTGTTCAT CGGCCCACCTTGAAGGAAGCAAAACGGTTATATACTAACCTAACACAGCTCTGTTATGAG ATGGAATGCTTGAGTACGGATGAACCCCATGTAGAGGATGTGACAAGTTTTGAACAAAGT AAAGAGGCAAAGCAGAAAAAAATTATGGATTCTGAGGAATCTATTTCTGTCTCGTCCTTA AGTTTGGACTTGCCAAATAAGCACGAAGGGACATCCATACATCCATCTAATAATGAAACA ACGCCTCTTCACGAAGCGGCAAAGTCTGGCAATGCTCAGCAAACACTGGAGTTGCTTGAG CAGGGTTTGGATCCTTGTATTAAAGATGCAAGAGGAAAAACACCTTACTTGCTGGCTTCG GACAAAGAAGTTAGAAATACATTCAGAAGATTTATGGCACTCAACCTAGACAAATGGGAT TGGCATGCGGCTGATGTGCCTAGTGCACTAACAAAGGAAATGGAAGAATCACAAGCTGCA AAGCAGGCAGAGAAGGATGCCAAGAAGAAGGCAAGAGCAAAGGAACTGAAGAAATTGAAG AAAGCAAGAGAAAAGGAAAAGGAGAAAGAAAAAGAAAAGGCACAAGCATCACAGTCCCAA AGGACCCAATCTAATGTAAGAGGCACTTCAGCTGGTCAAATGGCCAATGCAACTGCTTCT ATGCCAGGCCTGAAACAAAAGCATCAGCTGCCCCAGCCTACGGCACTTTCGAAAGAGGAG GAACGACAAAGGAAACTCGCCGAGGAAAGAGAGAAAAGAGCAGCCGCAGCCGAAAGAAGA TTTGCGGCTCTGGCGGCACAATCAAGTAGCACATCAGGGACAGCAGCAGCAGAACATCCC CCACAGAGAGCAGCCGCGGCAGACGATACTTCTTGTTCGTGCTGTTTTTCTTCCTTGGTC GGCAAAGTACCATTCCACAGGTACAATTACAAGTACTGCAGCACCACATGTATGCATCTT CATTCAGAAATGCTGGAAGATGATTGAGGAAATCAGGAAATTGTATGACGAGAGACATGA GATTTAATTATACCTTTCACCTGTTTTTCTTATGCATGAGATTCAATAACAGGTCTATCT ACCAGTCTTGCTTAATCTTTAGCTAATCCGAATCTTGTTACAAATTTCCAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)