Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9069 cluster # 9069       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9069#0 length = 663 sequences # 6  

consensusID : consensus_9069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 663
fasta sequence
                              [GCACCATCAATCAATCGATCGATCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAGCAGCAAGC-AGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGC-TCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCCTGTAACAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACAGTTTTATATAAAATTTNGCAAAAA]

[+] EMBL AK121447             [GCACCATCAATCAATCGATCGATCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAGCAGCAAGC AGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGC TCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCCTGTAACAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACAGTTTTATAT               ]
[+] EMBL AU172631             [                     ATCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAGCAGCAAGC AGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGC TCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGNTAATTTGATTGATGATCTGGAGCGATTAATAA                                                                                                                                                                                                                         ]
[+] EMBL AU165730             [                      TCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAGCAGCAANCAAGCTGATCTCTCGNTCGATCGATCGATCTCGGAAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGC TCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGA GGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCCTGTAACAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACAGTTTTATAAAAAA           ]
[+] EMBL C73496               [                      TCGATCGCGTCGCCATCGGCAACGNCACCGCACGCAAGCAGCAAGC AGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAG GCTTCTTCCTCGCCGCGCTCCTNTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGNGCGGCGGAGGAGTCATCCGCCGAGTNCCCCTACTCCGAGTCCTNCTCCGAGTCGTCGTCGTCGTNCTCCGNCGACGAGCCGGCGGAGGGagnc                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C98764               [                                                                                                                                                                                                                                                                                                                                                                                                      TCGNCCTCGCGTCGTGAACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAANTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCCTGTAACAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACNGTTTTATATTTGTTTTNGCAAAAA]
[+] EMBL AU094206             [                                                                                                                                                                                                                                                                                                                                                                                                                       ACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTaaaaaa                                                                                 ]


>consensus_9069#0 GCACCATCAATCAATCGATCGATCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAG CAGCAAGCAGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCA TGGCGCCTCGCGCAGCGCTCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGC CGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCG AGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGG CGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCA ACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTT GATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTG ATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATT AATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCCTGTAA CAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACAGTTTTATATAAAATTTNGCAA AAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)