cluster # 9074

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9074 cluster # 9074 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9074#0 length = 753 sequences # 4

consensus_9074#1 length = 685 sequences # 2

consensusID : consensus_9074#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 753
fasta sequence

                              [TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC-TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAATTCTC]

[+] EMBL CF279679             [TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGCCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAAGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAA                                                                                                                                  ]
[+] EMBL AK121513             [                                  AATCCAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAA                                                                                                                                   ]
[+] EMBL AK063795             [                                         CATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAATTCTC]
[-] EMBL CF279680             [                                                                                                                                                                                                                                                                                                                                                                  GCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTAC TTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAGAAAAAAa    ]




>consensus_9074#0
TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATC
TCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTC
ATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATC
TCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACAC
GCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTC
ACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAG
GATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGG
TTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTA
GCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCT
GTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGA
AACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATA
AATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCAC
TGTGATTGATTTGCCTCTGAAGAAAAAATTCTC

consensusID : consensus_9074#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [CCTAATCAAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA]

[-] EMBL CA760163             [CCTAATCAAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATCTCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA]
[+] EMBL D42207               [                           TCTCCCTACAACTAGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_9074#1
CCTAATCAAGCATCAGTCCCAGCTCGATCTCCCTACAACTCGCAAGGAAAATCCTCTGAA
TCTCTCCCATGGAAGGCATCATCCCGTTCATCTTCAGGGCGGTAGCGCAGTACAAGGAGG
GAGGGCACGTATCCCTCAGCGACATGATCTCCGACAAGCCGTCGCCGGCGTCGTACGTGC
TCCTGCCGGGGGACTCTGACGGCCGACACGCCGATGACAAGACCCAGCCACTTTGTCTTC
AGGCTTCCACCGGCCCCGAGGAGGAGGTCACCACCTGCACCGCCCGGGCGTCGCACCTCC
GGTGCTCCACGCTGCGCCGGCGAGCTTAGGATGCCGTGAACTGCTACGCCGATCAAACTG
CAGGTGCCAGTCGTTCAGACAATTTGAGGTTTGTGGTGCTGTGCTTGTGCAGTGCAGACA
GTGAGAGATGTAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCT
ATAAGCGACCTTTACTTTTTTTTTTAGCTGTTTATGCTCTGTAACGAGGTGCAGATCTCC
AAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAAAAACGAATTTG
TAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGG
TACGCATATGCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9074#0      TGACACTGACTGGACTGAAGGAGTAGAAAATCCTAATCCAGCATCAGTCCCAGCTCGATC 60
consensus_9074#1      -------------------------------CCTAATCAAGCATCAGTCCCAGCTCGATC 29
                                                     ******* *********************

consensus_9074#0      TCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTC 120
consensus_9074#1      TCCCTACAACTCGCAAGGAAAATCCTCTGAATCTCTCCCATGGAAGGCATCATCCCGTTC 89
                      ************************************************************

consensus_9074#0      ATCTTCAAGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATC 180
consensus_9074#1      ATCTTCAGGGCGGTAGCGCAGTACAAGGAGGGAGGGCACGTATCCCTCAGCGACATGATC 149
                      ******* ****************************************************

consensus_9074#0      TCCGACAGGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACAC 240
consensus_9074#1      TCCGACAAGCCGTCGCCGGCGTCGTACGTGCTCCTGCCGGGGGACTCTGACGGCCGACAC 209
                      ******* ****************************************************

consensus_9074#0      GCCGATGACAAGACCCAGCCACTTCGTCTTCAGGCTTCCACCGGCTCCGAGGAGGAGGTC 300
consensus_9074#1      GCCGATGACAAGACCCAGCCACTTTGTCTTCAGGCTTCCACCGGCCCCGAGGAGGAGGTC 269
                      ************************ ******************** **************

consensus_9074#0      ACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAG 360
consensus_9074#1      ACCACCTGCACCGCCCGGGCGTCGCACCTCCGGTGCTCCACGCTGCGCCGGCGAGCTTAG 329
                      ************************************************************

consensus_9074#0      GATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGG 420
consensus_9074#1      GATGCCGTGAACTGCTACGCCGATCAAACTGCAGGTGCCAGTCGTTCAGACAATTTGAGG 389
                      ************************************************************

consensus_9074#0      TTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTA 480
consensus_9074#1      TTTGTGGTGCTGTGCTTGTGCAGTGCAGACAGTGAGAGATGTAAGGAGCCTAGTACTTTA 449
                      ************************************************************

consensus_9074#0      GCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCT 540
consensus_9074#1      GCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTAGCT 509
                      ************************************************************

consensus_9074#0      GTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGA 600
consensus_9074#1      GTTTATGCTCTGTAACGAGGTGCAGATCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGA 569
                      ************************* **********************************

consensus_9074#0      AACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATA 660
consensus_9074#1      AACGCTTTGTATCTTGAGAAAAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATA 629
                      ************************************************************

consensus_9074#0      AATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAGTGCTATCTCGGTCAC 720
consensus_9074#1      AATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATATGCAAAAAAAAAAAAAA---- 685
                      ********************************************     *          

consensus_9074#0      TGTGATTGATTTGCCTCTGAAGAAAAAATTCTC 753
consensus_9074#1      ---------------------------------