These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 906 fasta sequence [TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCGCCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC-AGCATCAACTATGTGCTCATTG-CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGGTGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAAAAAAAAAAAAAAACAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAAAAAAAAA] [+] EMBL CF332691 [TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCGCCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTA ] [+] EMBL AU101623 [ TCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGANGTGGCGGTGGGGGCAGTAACTACTTNGGC ] [+] EMBL AK121615 [ CGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGGTGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGT ] [+] EMBL AU101624 [ GGTTATTTTCTGCCAATGCCAAGCATCAACTATGTGCTCATTGCCCNCAAACTGTCGTTNCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGNAGGTGGCGNAGGTGNCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAAAAAAAAAAAAAAA ] [-] EMBL CF332692 [ TATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGAAGGTGCCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCACCAGAAATTACATATTCAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAAAAAAAAA] consensusID : consensus_9081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [TGCTTTTGCAAAGGCATCGTATAGGAGATGAGGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCAGAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGCGGG] [-] EMBL BI306753 [TGCTTTTGCAAAGGCATCGTATAGGAGATGAGGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCAGAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9081#0 TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCG 60 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 CCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCG 120 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 CTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCAC 180 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 GCCTTGAGGTTATTTTCTGCCAATGCCAGCATCAACTATGTGCTCATTGCCACAAACTGT 240 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 CGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATG 300 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 TTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAA 360 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 ACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATC 420 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 TGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGA 480 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 TGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGG 540 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 TGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTAT 600 consensus_9081#1 ------------------------------------------------------------ consensus_9081#0 GGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGA 660 consensus_9081#1 -----------------------------TGCTTTTGCAAAGGCATCGTATAGGAGATGA 31 ******************************* consensus_9081#0 AGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAA 720 consensus_9081#1 GGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAA 91 *********************************************************** consensus_9081#0 ATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGT 780 consensus_9081#1 ATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGT 151 ************************************************************ consensus_9081#0 TACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAA 840 consensus_9081#1 TACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCA 211 ******************************** *********** ******* **** * consensus_9081#0 AAAAAAAAAAAAA-CAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAA 899 consensus_9081#1 GAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGG 271 *** * * * ************************* ** consensus_9081#0 AAAAAAA---- 906 consensus_9081#1 GGGGGGGCGGG 282 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||