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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1258 fasta sequence
[GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTGCTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT-GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATTTTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGATAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAATCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG]
[+] EMBL AK070445 [GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTGCTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCAGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ]
[+] EMBL AK121743 [ CCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGAGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ]
[+] EMBL CA754896 [ TTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCANATGATGCAGCCCTTTTGGGACGAACAGGCCAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAGAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTGTGGGAGAAGAAGCTAGGAGGCTCCCTGAAAGGACAAACGAAATG ]
[+] EMBL AK060164 [ GACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ]
[-] EMBL CB635414 [ TAATCACTCCCCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCCCGATCCCTTTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTTGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTTCTTGAGCGATGGACTGCCCCTGACGCCAGAAGGAAATGCTGTTGTCCCCAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTTTGAAAGCAGAAGAAATGCCATATGATTTCCCTCCCCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGGGGTTCATTTGCAGATTTTTTTTCCTCTTTGAATTAGGGGAAAGATCAAATTAAAGACAATGTTTTTCTGCTTTTGTCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATTTTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGATAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAATCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG]
consensusID : consensus_9086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGCAAGTTCTTTTCATTGGTCCTCCTGCTCTTGATTACTTCAGTTTCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTCAATGTACAGAATGTAAATGTTAAATTCTGATGATCTGGAACTTACAATGCTGTAAGAAATTGGTATGCAAGTAAAAGTTTTGCTATCTTGATGATAGCCATGATGCCTTGTTCATGAGAAGTGAGATCACTAGTTTTATGTTGTCGAACAAATACATGTGTCTGGGTAGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTCTTCTCCTCATGATGAGCTCTGAGAAAACAATTATGCTTTATCCCTGATGTGTCTTTTCCATAGATACATTGGCACTTCTATATTACCGTAGTGCTATAGCAAATTTGCCTTT]
[+] EMBL CB635413 [GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGCAAGTTCTTTTCATTGGTCCTCCTGCTCTTGATTACTTCAGTTTCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTCAATGTACAGAATGTAAATGTTAAATTCTGATGATCTGGAACTTACAATGCTGTAAGAAATTGGTATGCAAGTAAAAGTTTTGCTATCTTGATGATAGCCATGATGCCTTGTTCATGAGAAGTGAGATCACTAGTTTTATGTTGTCGAACAAATACATGTGTCTGGGTAGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTCTTCTCCTCATGATGAGCTCTGAGAAAACAATTATGCTTTATCCCTGATGTGTCTTTTCCATAGATACATTGGCACTTCTATATTACCGTAGTGCTATAGCAAATTTGCCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9086#0 GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTG 60
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 CTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGAT 120
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 AGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCT 180
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGC 240
consensus_9086#1 GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGC 60
************************************************************
consensus_9086#0 TGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCG 300
consensus_9086#1 TGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCG 120
************************************************************
consensus_9086#0 CCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAA 360
consensus_9086#1 CCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAA 180
************************************************************
consensus_9086#0 GATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTG 420
consensus_9086#1 GATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTG 240
************************************************ ***********
consensus_9086#0 CGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGAC 480
consensus_9086#1 CGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGAC 300
************************************************************
consensus_9086#0 AGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGG 540
consensus_9086#1 AGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGG 360
********** *************************************************
consensus_9086#0 ATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAA 600
consensus_9086#1 -------CAAGTTCTTTTC----------ATTGGTCCTCCTGCTCTTGATTACTTCAGTT 403
***** * * * ** *** *** ** ***** * *
consensus_9086#0 GGGAAAGATTTGCACGATCACTCTATGGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAA 660
consensus_9086#1 TCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTC---AATGTACAGAATGTAAAT 460
* * * *** *** * * * * * *** * * *
consensus_9086#0 ACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATAC 720
consensus_9086#1 GTTAAATT-CTGATG-ATCTGGAACTT-----ACAATGCTGT---AAGAAATTGGTATGC 510
**** *** ** * ** ** * * * *** ****** *** *
consensus_9086#0 ACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGA 780
consensus_9086#1 AA---GTAAAAGTTTTGCTATCTTGATGATAG---CCATGATGCC-----TTGTTCATGA 559
* * * *** * * * ** ** **** * * * * ***
consensus_9086#0 GCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGT-TGTCCAA 839
consensus_9086#1 GAAGTGAGAT-CACTAGTTTT---------ATGTTGTCGAACAAATACATGTGTCTGGGT 609
* ** * *** * *** *** * ** * * ** * *
consensus_9086#0 ACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTT-CCCTCACCATTC 898
consensus_9086#1 AGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTC 669
* ** ** * **** *** ** ** ** * **** ***
consensus_9086#0 CAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGC 958
consensus_9086#1 TTCTCCTCATGATGAGCTCTGAGAAAA-------CAATTATGCTTTATCCCTGATGTGTC 722
* *** * * ****** ** * * * * ** *** * *
consensus_9086#0 TTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATT 1018
consensus_9086#1 TTTTCCATAGATACATTGGCACTTCTATATTAC-CGTAGTGCTATAGCAAATTTGCCTTT 781
** * * * *** * * *** * ** * * * * ** *** * **
consensus_9086#0 AAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATT 1078
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 TTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGA 1138
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 TAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAA 1198
consensus_9086#1 ------------------------------------------------------------
consensus_9086#0 TCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG 1258
consensus_9086#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||