Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9088 cluster # 9088       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9088#0 length = 1832 sequences # 5  
consensus_9088#1 length = 947 sequences # 1  

consensusID : consensus_9088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1832
fasta sequence
                              [CTAAAACCCTCCCCTCTCCATCTCTCCTCTGCTTCGTCTCTCCTCTCCTCTCCGCCGCTGCATCGCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGAGCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATCTTGGATCTGCTGCTAGCTCCATAGACATTATAAGGATGTATAATTTGAGCAGTGACATGACTACCAGGATTGTTCAGGCACCACTAAGTGACCTCTGCTCCTTGCAAAACTCTGTCGATGTGTCTTCTGGTCTTAATGATAGCATTCAGGGTGAGGCACAAGAGCCCACTGCAGTACCAGTGGAGAATACTCAGCCATCTGTACCACAACCAACTGACACAGCAGTACCAGATGAGAAAACACAGTCACCTAAAGAACAATCTATTGATATAGATATCCCTGAGCCCTTATTGGATGAGCACATTAATCAGGATGGCAATTCTTCTTTAGATAGTAAAGGAGATGAGGATGGAAGTTCAATAGGTCCCAAATCACTCAAGG-CAGGAAAGG-CACCATCACCAGAGAGGAT-GAAATATTGGAGTGAACATGGATTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTGCTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTCGCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAACCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAATGCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAG-CCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCACCATTTTACA-CGGTAACCTGAAA--CAATAGACA-CAAT-TTTGTAGTCCA-GAGAAGCCAACTTTTATGCTGAAGCGA-CTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAGTGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAACAATGTTGTGTTTGTTTATCAACCAAA-TTGAAACGCTTGTGGACTTTGAGATATTTGTTAAGGTGTGCTACTTACTATTTGTTAAAAAAAAAA]

[+] EMBL AK073153             [CTAAAACCCTCCCCTCTCCATCTCTCCTCTGCTTCGTCTCTCCTCTCCTCTCCGCCGCTGCATCGCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGAGCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATCTTGGATCTGCTGCTAGCTCCATAGACATTATAAGGATGTATAATTTGAGCAGTGACATGACTACCAGGATTGTTCAGGCACCACTAAGTGACCTCTGCTCCTTGCAAAACTCTGTCGATGTGTCTTCTGGTCTTAATGATAGCATTCAGGGTGAGGCACAAGAGCCCACTGCAGTACCAGTGGAGAATACTCAGCCATCTGTACCACAACCAACTGACACAGCAGTACCAGATGAGAAAACACAGTCACCTAAAGAACAATCTATTGATATAGATATCCCTGAGCCCTTATTGGATGAGCACATTAATCAGGATGGCAATTCTTCTTTAGATAGTAAAGGAGATGAGGATGGAAGTTCAATAGGTCCCAAATCACTCAAGG CAGGAAAGG CACCATCACCAGAGAGGAT GAAATATTGGAGTGAACATGGATTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTGCTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTCGCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAACCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAATGCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAG CCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCACCATTTTACA CGGTAACCTGAAA  CAATAGACA CAAT TTTGTAGTCCA GAGAAGCCAACTTTTATGCTGAAGCGA CTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAGTGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAACAATGTTGTGTTTGTTTATCAACCAAA TTGAAACGCTTGTGGACTTTGAGATATTTGTTAAGGTGTGCTACTT                    ]
[+] EMBL AK121833             [                                           TCTCCTCTCCGCCGCTGCATCCCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGAGCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATCTTGGATCTGCTGCTAGCTCCATAGACATTATAAGGATGTATAATTTGAGCAGTGACATGACTACCAGGATTGTTCAGGCACCACTAAGTGACCTCTGCTCCTTGCAAAACTCTGTCGATGTGTCTTCTGGTCTTAATGATAGCATTCAGGGTGAGGCACAAGAGCCCACTGCAGTACCAGTGGAGAATACTCAGCCATCTGTACCACAACCAACTGACACAGCAGTACCAGATGAGAAAACACAGTCACCTAAAGAACAATCTATTGATATAGATATCCCTGAGCCCTTATTGGATGAGCACATTAATCAGGATGGCAATTCTTCTTTAGATAGTAAAGGAGATGAGGATGGAAGTTCAATAGGTCCCAAATCACTCAAGG CAGGAAAGG CACCATCACCAGAGAGGAT GAAATATTGGAGTGAACATGGATTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTGCTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTCGCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAACCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAATGCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAG CCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCACCATTTTACA CGGTAACCTGAAA  CAATAGACA CAAT TTTGTAGTCCA GAGAAGCCAACTTTTATGCTGAAGCGA CTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAGTGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAACAATGTTGTGTTTGTTTATCAACCAAA TTGAAACGCTTGTGGACTTTGAGATATTTGTTAAGGTGTGCTACTT                    ]
[+] EMBL C96678               [                                                                                                                                                                                                                                                                                                                                                                                                                 TGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGAGCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATC TGGATCTGCTGCTAGCTCCATAGACATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C96679               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGGCCAGGAAAGGCCACCATCACCAGAGAGGATGGAAATATTGGAGTGAACATGGATTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTGCTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTCGCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAACCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAATGCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAGCCCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCACCATTTTACA CGGTAACCTGAAA  CAATAGACA CAAT TTTGTAGTCCA GAGAAGCCAACTTTTATGCTGAAGCGA CTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAGTGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAACAATGTTGTGTTTGTTTATCAACCAAA TTGAAACGCTTGTGGACTTTGAGATATTTGTTAAGGTGTGCTACTTACTATTTGTTAAAAAAA   ]
[+] EMBL BM421803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTATATTTTGAGTGCCATTAGGATAC CCATGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAG CCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCACCATTTTACACCGGTAACCTGGAANCCCATAGACACCAATGTTTGTAGTCCACGAGAAGCC ACTTTTATGCTGAAGCGACCTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAGTGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACC AATCCATGTAGCCTACATAAC ATGTTGTGTTTGTTTATCAACCAAATTTGAAACGCTTGTGGACTTTGAGATATTTTTTAAGGTGTGCTACTTACTATTTGTTAAAAAAAAAA]


>consensus_9088#0 CTAAAACCCTCCCCTCTCCATCTCTCCTCTGCTTCGTCTCTCCTCTCCTCTCCGCCGCTG CATCGCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGC GTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCG ACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGC TCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGC GATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGA TCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAG AGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTT GGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCA CCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAA AGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCA AATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGA GCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATCTTGGATCTGCT GCTAGCTCCATAGACATTATAAGGATGTATAATTTGAGCAGTGACATGACTACCAGGATT GTTCAGGCACCACTAAGTGACCTCTGCTCCTTGCAAAACTCTGTCGATGTGTCTTCTGGT CTTAATGATAGCATTCAGGGTGAGGCACAAGAGCCCACTGCAGTACCAGTGGAGAATACT CAGCCATCTGTACCACAACCAACTGACACAGCAGTACCAGATGAGAAAACACAGTCACCT AAAGAACAATCTATTGATATAGATATCCCTGAGCCCTTATTGGATGAGCACATTAATCAG GATGGCAATTCTTCTTTAGATAGTAAAGGAGATGAGGATGGAAGTTCAATAGGTCCCAAA TCACTCAAGGCAGGAAAGGCACCATCACCAGAGAGGATGAAATATTGGAGTGAACATGGA TTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTG CTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTC GCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAA CCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAAT GCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGA AGCAAGTGAATGACCAAGCCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTC ACCATTTTACACGGTAACCTGAAACAATAGACACAATTTTGTAGTCCAGAGAAGCCAACT TTTATGCTGAAGCGACTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAG TGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAAC AATGTTGTGTTTGTTTATCAACCAAATTGAAACGCTTGTGGACTTTGAGATATTTGTTAA GGTGTGCTACTTACTATTTGTTAAAAAAAAAA



consensusID : consensus_9088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 947
fasta sequence
                              [GCTGCATCCCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGGCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGGGGGTGATAGGGGTGGAGGTTAATGGGGGGAGCTGGAGCTGACGCTTAGAGGGCCGGGTTGGGTGCGGCCAAATCTTGATCTGTGGTGCGCCTAGACATAAGAGGAGGCTAATTGGGCACGGCCTGCTACGAAAGGGGTAGGAGCCCGACAACGCGGTTCTGGCAGANTGGCGAGGACGCGCGTCTATGATAGGGACGGGGGGGCTGAACCCGTGACCCCTGGGAGAGTGGACGTAAAAGCCGACCAGGGGGGAAGAGAATAGCGNGTAAAGCAGTGAGGTCGGCCGGAGGGAGGGACAGTGGGAAAGAGTTGGA]

[+] EMBL BE039826             [GCTGCATCCCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGGCTATGGCAAATGTTGGTCCATATTCGGATGTCCTTGGGGGTGATAGGGGTGGAGGTTAATGGGGGGAGCTGGAGCTGACGCTTAGAGGGCCGGGTTGGGTGCGGCCAAATCTTGATCTGTGGTGCGCCTAGACATAAGAGGAGGCTAATTGGGCACGGCCTGCTACGAAAGGGGTAGGAGCCCGACAACGCGGTTCTGGCAGANTGGCGAGGACGCGCGTCTATGATAGGGACGGGGGGGCTGAACCCGTGACCCCTGGGAGAGTGGACGTAAAAGCCGACCAGGGGGGAAGAGAATAGCGNGTAAAGCAGTGAGGTCGGCCGGAGGGAGGGACAGTGGGAAAGAGTTGGA]


>consensus_9088#1 GCTGCATCCCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTG CAGCGTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGC CGCGACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTT CGGCTCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTC TCGCGATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAA TAGATCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAAT GAAGAGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCAC ATTTGGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATA TGCACCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAA GAAAAGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGGCTAT GGCAAATGTTGGTCCATATTCGGATGTCCTTGGGGGTGATAGGGGTGGAGGTTAATGGGG GGAGCTGGAGCTGACGCTTAGAGGGCCGGGTTGGGTGCGGCCAAATCTTGATCTGTGGTG CGCCTAGACATAAGAGGAGGCTAATTGGGCACGGCCTGCTACGAAAGGGGTAGGAGCCCG ACAACGCGGTTCTGGCAGANTGGCGAGGACGCGCGTCTATGATAGGGACGGGGGGGCTGA ACCCGTGACCCCTGGGAGAGTGGACGTAAAAGCCGACCAGGGGGGAAGAGAATAGCGNGT AAAGCAGTGAGGTCGGCCGGAGGGAGGGACAGTGGGAAAGAGTTGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9088#0      CTAAAACCCTCCCCTCTCCATCTCTCCTCTGCTTCGTCTCTCCTCTCCTCTCCGCCGCTG 60
consensus_9088#1      --------------------------------------------------------GCTG 4
                                                                              ****

consensus_9088#0      CATCGCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGC 120
consensus_9088#1      CATCCCCTCCAAAAATAAAAAATGGCGGCGATTCCCCGGGAGGCATGGGAGGGCTGCAGC 64
                      **** *******************************************************

consensus_9088#0      GTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCG 180
consensus_9088#1      GTCCTCCTCGACATCAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCG 124
                      ************************************************************

consensus_9088#0      ACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGC 240
consensus_9088#1      ACGGTCAAGGTGGGGAACAGGACCTGCTCGCTGCAGCCGCTCGTCGGTCGCCCCTTCGGC 184
                      ************************************************************

consensus_9088#0      TCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGC 300
consensus_9088#1      TCCCTCTTCAGCGTCGGCCCCTCCGGCCTCGTCCCCTGCGCCGACGCCCCATCTTCTCGC 244
                      ************************************************************

consensus_9088#0      GATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGA 360
consensus_9088#1      GATGATACAACGCAAGATGCTGCTGATGGTCCCTCGCAGGATGAAACTAGGGACAATAGA 304
                      ************************************************************

consensus_9088#0      TCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAG 420
consensus_9088#1      TCTCTTGTCGATAATAATACAGCACAGAATTTATCTAGCGATGACATAGAGGCAATGAAG 364
                      ************************************************************

consensus_9088#0      AGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTT 480
consensus_9088#1      AGAGATGGTGTAAGTGGTGATGAGATTGTAGAAGCTTTGATAGCAAATAGCTCCACATTT 424
                      ************************************************************

consensus_9088#0      GGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCA 540
consensus_9088#1      GGGAAGAAGACCCTTTTTTCCCAAGAGAAATACAAACTAAAGAAACAGAAGAAATATGCA 484
                      ************************************************************

consensus_9088#0      CCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAA 600
consensus_9088#1      CCCAAAGTGCTTTTACGGCGCCCCTCTACCCGAAGCATTTGTGAGACATATTTCAAGAAA 544
                      ************************************************************

consensus_9088#0      AGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGTCTATGGCA 660
consensus_9088#1      AGCCCAGCTCGAACAGGGTTTATGCGAGTTGATGCACTGTCCCTCTTGTTGGCTATGGCA 604
                      *************************************************** ********

consensus_9088#0      AATGTTGGTCCATATTCGGATGTCCTTGTGGTTGATATGGTTGGAGGTTTAGTAGTTGGA 720
consensus_9088#1      AATGTTGGTCCATATTCGGATGTCCTTGGGGGTGATAGGGGTGGAGGTT-AATGGGGGGA 663
                      **************************** ** ***** ** ******** * * *  ***

consensus_9088#0      GCTGTAGCTGAACGCTTAGGAGGTACTGGGTATGTTTGCAGCACATATCTTGGATCTGCT 780
consensus_9088#1      GCTGGAGCTGA-CGCTTAGAGGG--CCGGGT-TGGGTGCGGC-CAAATCTTG-ATCTGTG 717
                      **** ****** *******  **  * **** **  *** ** ** ****** *****  

consensus_9088#0      GCTAGCTCCATAGACATTATAAGGATGTATAATTTGAGCAGTGACATGACTACCAGGATT 840
consensus_9088#1      GTGCGCC---TAGACATAA-GAGGAGGC-TAATT-GGGCA-CGGCCTG-CTACGAAAGGG 769
                      *   **    ******* *  **** *  ***** * ***  * * ** **** *     

consensus_9088#0      GTTCAGGCACCACTAAGTGACCTCTGCTCCTTGCAAAACTCTGTCGATGTGTCTTCTGGT 900
consensus_9088#1      GTAGGAGCCCGACAACGCGG-------TTCTGGCAGANTGGCGAGGACGCGC------GT 816
                      **    ** * ** * * *        * ** *** *     *  ** * *       **

consensus_9088#0      CTTAATGATAGCATTCAGGGTGAGGCACAAGAGCCCACTGCAGTACCAGTGGAGAATACT 960
consensus_9088#1      CT--ATGATAGGGACGGGGGGGCTGAACCCGTGACCCCTG----------GGAGAGTGG- 863
                      **  *******      *** *  * **  * * ** ***          ***** *   

consensus_9088#0      CAGCCATCTGTACCACAACCAACTGACACAGCAGTACCAGATGAGAAAACACAGTCACCT 1020
consensus_9088#1      -----ACGTAAAAGCCGACCAGGGGGGAAGAGAATAGCGNGTAAAGCAGTGAGGTCGGCC 918
                           *  *  *   * ****   *  *    * ** *   * *   *     ***  * 

consensus_9088#0      AAAGAACAATCTATTGATATAGATATCCCTGAGCCCTTATTGGATGAGCACATTAATCAG 1080
consensus_9088#1      GGAGGGAGGGACAGTGGGAAAGAGTTGGA------------------------------- 947
                        **        * **  * ***  *                                  

consensus_9088#0      GATGGCAATTCTTCTTTAGATAGTAAAGGAGATGAGGATGGAAGTTCAATAGGTCCCAAA 1140
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      TCACTCAAGGCAGGAAAGGCACCATCACCAGAGAGGATGAAATATTGGAGTGAACATGGA 1200
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      TTTAGCAGTTTGATTGTTGCTGCTCCGGGGCATGATGTTGAAAGTTTTGTTGCTGATCTG 1260
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      CTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTC 1320
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      GCAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAA 1380
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      CCCTGGCTTCGTGAATACCAGGTCCTTCCATCACGAACTCATCCACACATGCAAATGAAT 1440
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      GCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAATGGCGATGCATGTAATGGA 1500
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      AGCAAGTGAATGACCAAGCCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTC 1560
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      ACCATTTTACACGGTAACCTGAAACAATAGACACAATTTTGTAGTCCAGAGAAGCCAACT 1620
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      TTTATGCTGAAGCGACTTATGTGATTAGTAGAAATTGGTGCGCATATAGAGAATAACTAG 1680
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      TGCGAGTTCTAGAAGAAAATGAAATGAGCATGTACACCAAATCCATGTAGCTTACATAAC 1740
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      AATGTTGTGTTTGTTTATCAACCAAATTGAAACGCTTGTGGACTTTGAGATATTTGTTAA 1800
consensus_9088#1      ------------------------------------------------------------
                                                                                  

consensus_9088#0      GGTGTGCTACTTACTATTTGTTAAAAAAAAAA 1832
consensus_9088#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)