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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1111 fasta sequence
[AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGCCGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTCCTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCTCCTCCTCCTCCTCCTCCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAGCGGGGGGTGGCGGTGGAGGAGGCGGAAGCGG-TGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGCTGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT-GTGAT-CCGC-TCT-CCTCACGCCATGG-CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT-GAGATTGCGAGTGTATATTG-ATGAGCT-AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT-GATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGGTGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA]
[+] EMBL AK121901 [AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGCCGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTCCTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCTCCTCCTCCTCCTCCTCCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAGCGGGGGGTGGCGGTGGAGGAGGCGGAAGCGG TGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGCTGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT GTGAT CCGC TCT CCTCACGCCATGG CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT GAGATTGCGAGTGTATATTG ATGAGCT AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT GATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTT ]
[+] EMBL AU162275 [ CGGCTACTACNTCCCCTCCTCCTCANGNTCCTNCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGTCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCG GCTCCCGCCGCCGCCCGGGA GCGGGACGGCTACCTGGGAGGTGGCGGANGGTGGGGTGGNGGTGGAGGAGGCGGAAGCGGTTGGCATGTGGTGCTTTAGGNACCCGGAGATNAAGCGGCGGC ]
[+] EMBL CA999465 [ GGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT GTGAT CCGC TCT CCTCACGCCATGG CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT GAGATTGCGAGTGTATATTG ATGAGCT AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT ]
[+] EMBL AU029601 [ AAAAACCCTCTGGGGATCCCGCTTCTCCCTCACGCCATGGCCAAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCCCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCNCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTTGGAGA TGCGAGTGTATATTGNATGAGCTAAATGGAGGGTGGGAGGCGTTTGCGAANGCTCCATTTGGATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGGTGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA]
consensusID : consensus_9092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence
[GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCTGCAA-CATGTGCAAGGAGTGTACTCGCTACTACTAATTTTCTGCCAAAAATGCGGAAGGATTTGTCCAAGAGACCGAGGGGAACTGTTCTTGGGTGGTCAGGTTATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGATGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA]
[+] EMBL AU225644 [GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCTGCAA CATG ]
[+] EMBL AK106296 [ CTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAAGGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTTCAGTTTGGGTTGGAACACGATACAA GCCTGCAACCATGTGCAAGGAGTGTACTCGCTACTACTAATTTTCTGCCAAAAATGCGGAAGGATTTGTCCAAGAGACCGAGGGGAACTGTTCTTGGGTGGTCAGGTTATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGATGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9092#0 AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGC 60
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 CGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTC 120
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 CTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCT--CCTCCTCCTCCTCCTCC 178
consensus_9092#1 --------GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCC 52
* * **** * * ** ** * * * * ** ** **
consensus_9092#0 CCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGAC 238
consensus_9092#1 GCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACC--ACGACCGCCC-CTAC 109
** *** * *** *** * *** * ** * *** ** * ** ** * * **
consensus_9092#0 CGGCGGATCGAGATC-TACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCT 297
consensus_9092#1 CACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCG 169
* * **** * * * **** * * ** * ** * * * * * **
consensus_9092#0 CGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAG-CGGGGG 356
consensus_9092#1 GGCACCACCACCACCACCACCACG--AGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGG 227
** * ** ** ** ** * ** ** ** * * * ** *** * * **
consensus_9092#0 GTGGCGGTGGAGGAGGCGGAAGCGGTGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGC 416
consensus_9092#1 TTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGA 287
*** ** ** ***** ** * ** * ***************************
consensus_9092#0 GGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGC 476
consensus_9092#1 GGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCC 347
******************************************* ** * *** * ** *
consensus_9092#0 TGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAA 536
consensus_9092#1 TCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAG--- 404
* ** ***** ******** ****** ************* * **** ** **
consensus_9092#0 AACCCTCTGTGATCCGCTCTCCTCACGCCATGGCTAATGATGGCTCCTCCTCCACTTCTC 596
consensus_9092#1 ------CCGTGG---GATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCT 455
* *** * *** * * * * *** * * ** * *
consensus_9092#0 GGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCG 656
consensus_9092#1 GCAACATGTG-------CAAGGAGTGTACTCGCTAC-----TACTAATTTTCTGCCAAAA 503
* ** * * * * * ** ** * **** * ***
consensus_9092#0 GAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGAT 716
consensus_9092#1 ATGCGGAAGGATTTGTCCAAGAGAC----CGAGGGGAACTGTTCTTG--GGTGGTCAGGT 557
* * * * * *** * * * * ** * ** * * * *
consensus_9092#0 GAAATTTGAGATTGCGAGTGTATATTGATGAGCTAATGGAGGGTGGGAGGCGTTTGCGAA 776
consensus_9092#1 TATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGA 617
* * ** ** * ** * ** * * * * **** *
consensus_9092#0 TGCTCCATTTGATGCGTGC--GCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGC 834
consensus_9092#1 TGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA------------------ 659
**** ** ** *** *** * ** ** **
consensus_9092#0 GGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGT 894
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 TGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAG 954
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 GCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTA 1014
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 CTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGG 1074
consensus_9092#1 ------------------------------------------------------------
consensus_9092#0 TGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA 1111
consensus_9092#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||