These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1111 fasta sequence [AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGCCGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTCCTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCTCCTCCTCCTCCTCCTCCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAGCGGGGGGTGGCGGTGGAGGAGGCGGAAGCGG-TGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGCTGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT-GTGAT-CCGC-TCT-CCTCACGCCATGG-CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT-GAGATTGCGAGTGTATATTG-ATGAGCT-AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT-GATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGGTGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA] [+] EMBL AK121901 [AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGCCGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTCCTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCTCCTCCTCCTCCTCCTCCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAGCGGGGGGTGGCGGTGGAGGAGGCGGAAGCGG TGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGCTGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT GTGAT CCGC TCT CCTCACGCCATGG CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT GAGATTGCGAGTGTATATTG ATGAGCT AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT GATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTT ] [+] EMBL AU162275 [ CGGCTACTACNTCCCCTCCTCCTCANGNTCCTNCCCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGTCGGCTTTGCGGCCAACGGCGACCGGCGGATCGAGATCTACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCTCG GCTCCCGCCGCCGCCCGGGA GCGGGACGGCTACCTGGGAGGTGGCGGANGGTGGGGTGGNGGTGGAGGAGGCGGAAGCGGTTGGCATGTGGTGCTTTAGGNACCCGGAGATNAAGCGGCGGC ] [+] EMBL CA999465 [ GGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAAAACCCTCT GTGAT CCGC TCT CCTCACGCCATGG CTAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTT GAGATTGCGAGTGTATATTG ATGAGCT AATGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTT ] [+] EMBL AU029601 [ AAAAACCCTCTGGGGATCCCGCTTCTCCCTCACGCCATGGCCAAATGATGGCTCCTCCTCCACTTCTCGGAATGAAAGGCCCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGAAGGTAATGATCCTGATATCNCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTTGGAGA TGCGAGTGTATATTGNATGAGCTAAATGGAGGGTGGGAGGCGTTTGCGAANGCTCCATTTGGATGCGTGCGCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGGTGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA] consensusID : consensus_9092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCTGCAA-CATGTGCAAGGAGTGTACTCGCTACTACTAATTTTCTGCCAAAAATGCGGAAGGATTTGTCCAAGAGACCGAGGGGAACTGTTCTTGGGTGGTCAGGTTATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGATGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA] [+] EMBL AU225644 [GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCTGCAA CATG ] [+] EMBL AK106296 [ CTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCCGCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACCACGACCGCCCCTACCACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCGGGCACCACCACCACCACCACCACGAGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGGTTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAAGGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCGTGGGATCTTGGTGGAGTTCAGTTTGGGTTGGAACACGATACAA GCCTGCAACCATGTGCAAGGAGTGTACTCGCTACTACTAATTTTCTGCCAAAAATGCGGAAGGATTTGTCCAAGAGACCGAGGGGAACTGTTCTTGGGTGGTCAGGTTATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGATGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9092#0 AAATCAAAGCAAAAAAAACACAAGAGCATTTCCCATCTCTCCCACTCCTTCCGCCATGGC 60 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 CGACTACCACCGCCCCTACCGGAGCGACCTCGACCTCCGCCCACCGCCGCCGCCGCCGTC 120 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 CTCCGCCTCCTTCCCGCACTCCAACGGCTACTACCTCCCCT--CCTCCTCCTCCTCCTCC 178 consensus_9092#1 --------GCCGCTCGCAACTCGGCAGCGGAAGCCGCGCGCGACGACGATGGCCGCCGCC 52 * * **** * * ** ** * * * * ** ** ** consensus_9092#0 CCCACCGCCAACGGCTACTTCTCCTCCAAGGGCACCGGCGGCTTTGCGGCCAACGGCGAC 238 consensus_9092#1 GCCGCCGACTACGAGTACCGCGCCTACGGGGCCCCCGCCGACC--ACGACCGCCC-CTAC 109 ** *** * *** *** * *** * ** * *** ** * ** ** * * ** consensus_9092#0 CGGCGGATCGAGATC-TACACCACGGCGCCGCCCCCGCCGCTGCCCCCTCCGCCGCGCCT 297 consensus_9092#1 CACGGCCGCGAGGTGGTGCCGTACGGGGACCGCCGCATCGACGTCGTCGTCAAGCCCCCG 169 * * **** * * * **** * * ** * ** * * * * * ** consensus_9092#0 CGCGCTCCCGCCGCCGCCCGGGAGGCGGGACGGCTACCTGGGAGGTGGCGGAG-CGGGGG 356 consensus_9092#1 GGCACCACCACCACCACCACCACG--AGGTCGCCTCCGCCGCCGCTGCCGGTGACCAAGG 227 ** * ** ** ** ** * ** ** ** * * * ** *** * * ** consensus_9092#0 GTGGCGGTGGAGGAGGCGGAAGCGGTGGCATGTGGTGCTTCAGCGACCCGGAGATGAAGC 416 consensus_9092#1 TTGGGGGCGGGGGAGGAGGCATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGA 287 *** ** ** ***** ** * ** * *************************** consensus_9092#0 GGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGCAAGATGAAGGCGTCGC 476 consensus_9092#1 GGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGAGGGGAATGTCAAGTCCTCCC 347 ******************************************* ** * *** * ** * consensus_9092#0 TGCGGAGGGGGCTCCGCTGGTTCAAGGGCAAGTGCTCCGAGATCTTCCACGGATGGTAAA 536 consensus_9092#1 TCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAG--- 404 * ** ***** ******** ****** ************* * **** ** ** consensus_9092#0 AACCCTCTGTGATCCGCTCTCCTCACGCCATGGCTAATGATGGCTCCTCCTCCACTTCTC 596 consensus_9092#1 ------CCGTGG---GATCTTGGTGGAGTACAGTTTGGGTTGGAACACGATACAATGCCT 455 * *** * *** * * * * *** * * ** * * consensus_9092#0 GGAATGAAAGGCTCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCG 656 consensus_9092#1 GCAACATGTG-------CAAGGAGTGTACTCGCTAC-----TACTAATTTTCTGCCAAAA 503 * ** * * * * * ** ** * **** * *** consensus_9092#0 GAAGGAAGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGAT 716 consensus_9092#1 ATGCGGAAGGATTTGTCCAAGAGAC----CGAGGGGAACTGTTCTTG--GGTGGTCAGGT 557 * * * * * *** * * * * ** * ** * * * * consensus_9092#0 GAAATTTGAGATTGCGAGTGTATATTGATGAGCTAATGGAGGGTGGGAGGCGTTTGCGAA 776 consensus_9092#1 TATAGGAAAGGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGA 617 * * ** ** * ** * ** * * * * **** * consensus_9092#0 TGCTCCATTTGATGCGTGC--GCGGTAGGCGAACTTGAGGAATAATATGCATTTTGCGGC 834 consensus_9092#1 TGCTGTTGTTACTGTCTGCTAATTCTAGCCTAATTTTTTCAA------------------ 659 **** ** ** *** *** * ** ** ** consensus_9092#0 GGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGT 894 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 TGTGTGGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAG 954 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 GCCTCAACCCGAGTTGGTATTTGGCTATTTGCTACCACAGTTTGTTTGTTGTTACTTCTA 1014 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 CTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGATAGATGTAGAAATGGG 1074 consensus_9092#1 ------------------------------------------------------------ consensus_9092#0 TGAGATGATCATCTTTGCTCAAAAAAAAAAAAAAAAA 1111 consensus_9092#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||