These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1466 fasta sequence [GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGT-GGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA--TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA-ATTCCTGTTTGTAAATATACGA-AGA-ATAATTTCTCTTTGCACTA-AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTACTTCCAGTAAAGTTCTTATCCAAAAAAAA] [+] EMBL OSR1977A [GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAAGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAANATNGTGCCTCCGGGGCCGNATTTCCTCTACTACTGCTCCCCCAACAGGCACGNAAATNAGTTCGCACCTACTGTNGNATTCTTTCTTACTACTCACCCATCTNAGGTAATTATTCGGAAGT GGCATNCACAGGAGGAGAGATTAATAAAACTACCAGANGANGAGGAAAT ] [+] EMBL AK121974 [ GGCGGCGGCGCGGCGGCGGCGGTGGACCCGGAGGCGGCGACGGAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGT GGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGGAGATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA ATTCCTGTTTGTAAATATACGA AGA ATAATTTCTCTTTGCACTA AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTC ] [+] EMBL OSS4018A [ CGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGG AATCAGATATTCTGAAG ] [+] EMBL AU173273 [ ATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA ATTCCTGTTTGTAAATATACGA AGA ATAATTTCTCTTTGCACTA AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTNTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTACTTCCAGTAAAGTTCTTATCCAAAAAAAA] [+] EMBL AU161659 [ AAGAATTGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAANATTCCTGTTTGTAAATATACGAGAGANATAATTTCTCTTTGCACTANAGCGGTCTATCTTGTACTAaaaaaaaa ] consensusID : consensus_9101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [AGGACGAGACAAGGGGGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTAAATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTATTTACCCGAGCCTTTTAT] [+] EMBL CA765070 [AGGACGAGACAAGGGGGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTAAATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTATTTACCCGAGCCTTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9101#0 GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGG 60 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 GCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGG 120 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 TGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCC 180 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 TCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTC 240 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 TTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGCATGCACAGGAGGAGAGATTAA 300 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 TAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTG 360 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 ACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCT 420 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 ACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCAT 480 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 GGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACC 540 consensus_9101#1 ------------------------------------------------------------ consensus_9101#0 AACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCT 600 consensus_9101#1 --------------------------------AGGACGAGACAAGGGGGGAGAGGATGCT 28 * * * ************ consensus_9101#0 ACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTG 660 consensus_9101#1 ACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTG 88 ****************************************** ***************** consensus_9101#0 CATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCC 720 consensus_9101#1 CATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCC 148 ************************************************************ consensus_9101#0 AAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGT 780 consensus_9101#1 AAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGT 208 ************************************************************ consensus_9101#0 CACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAG 840 consensus_9101#1 CACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAG 268 ************************************************************ consensus_9101#0 CTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAAC 900 consensus_9101#1 CTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAAC 328 ************************************************************ consensus_9101#0 TCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTC 960 consensus_9101#1 TCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTC 388 ********** ************************************************* consensus_9101#0 TGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATT 1020 consensus_9101#1 TGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATT 448 *************************** ***************** ************** consensus_9101#0 TCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAA 1080 consensus_9101#1 TCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAA 508 ************************ *********************************** consensus_9101#0 AACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATC 1140 consensus_9101#1 AACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATC 568 ************************************************************ consensus_9101#0 TAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTC 1200 consensus_9101#1 TAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTC 628 ************************************************************ consensus_9101#0 AGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAA 1260 consensus_9101#1 AGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAA 688 ************************************************************ consensus_9101#0 GATTACAAGTAGGGCTTTCTTGGCAGTATGTATCC-TGGTTTCCTAAATTCCTGTTTGTA 1319 consensus_9101#1 GATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTA 748 ********************************* * *** ******** ***** ***** consensus_9101#0 AATATACGAAGAATAATTTCTCTTTGCACTAA-GCGGTCTATCTTGTACTAGTACGCTAT 1378 consensus_9101#1 AATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTAT 808 *************************** ** * **** ******** ***** ******* consensus_9101#0 TTACC-GAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTA 1437 consensus_9101#1 TTACCCGAGCCTTTTAT------------------------------------------- 825 ***** *********** consensus_9101#0 CTTCCAGTAAAGTTCTTATCCAAAAAAAA 1466 consensus_9101#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||