cluster # 9104

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Oryza sativa
cluster # 9104 cluster # 9104 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9104#0 length = 650 sequences # 5

consensus_9104#1 length = 198 sequences # 1

consensusID : consensus_9104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 650
fasta sequence

                              [ATTACTTGGGCCGGCAACCACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGAGAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTGATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGA-CCCCAAC-TACGACCCCGACGAGCCCACCGCCGCCGGC-GCC-GCCGCCAACGAGCCTC-TCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAA-TATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGT-GACCTTCATTTCCACAATCT-GAGATATTTCTGTTCTGTAATCTGTAAAAATTGAGACTGATCCATCTCAATTTCCTATGGGAGGGGAGGCTACGCATTTCATTGCANAAAAAAN]

[+] EMBL AK105386             [ATTACTTGGGCCGGCAACCACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGAGAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTGATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTACAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGA CCCCAAC TACGACCCCGACGAGCCCACCGCCGCCGGC GCC GCCGCCAACGAGCCTC TCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAA TATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGT GACCTTCATTTCCACAATCT GAGATATT                                                                                      ]
[+] EMBL AK122093             [    CTTGGGCCGGCAACCACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGAGAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTGATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGA CCCCAAC TACGACCCCGACGAGCCCACCGCCGCCGGC GCC GCCGCCAACGAGCCTC TCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAA TATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTC                                                                                                                                                                   ]
[+] EMBL CA754743             [                   ACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGAGAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTGATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGA CCCCAAC TACGACCCCGACGAGCCCACCGCCGCCGGC GCC GCCGCCAACGAGCCTC TCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAA TATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGT GACCTTCATTTCCACAATCT GAGATATTTCTGTTCTGGTATCTGTACNATTTGAGACTGATCCATCTCAATTTCCTATGGGAGGGGAGGCTACGCATTTCATTGCANAAAAAAN]
[+] EMBL BI804338             [                                                                       CTGTCGCC GCGGCGAGGAGATCGGAT GGGGCCGTGGTGACGCCGGTGATAGCCATCGC GCGGTGGTCCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGA CCCCAAC TACGACCCCGACGAGCCCACCGCCGCCGGC GCC GCCGCCAACGAGCCTCTTCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAA TATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGTCGACCTTCATTTCCAC ATCT GAGATATTTCTGTTCTGTAATCTGTAAAAA                                                                ]
[+] EMBL BI803005             [                                                                                                                   CGGTGATATCCATTCCGGCGGT GTTCT GGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGCCTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGACCCCCAACTTACGACCCCGACGAGCCCACC CCGCCGGCAGCCAGCCGCCAACGAGCCTC TCCTCGCGGACCTCTCCGCCGCCTCCGCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAACTAT CCCGATTCCTTGCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGT GACCTTCATTTCCACCATCTCGAGATATTTCTGTTCTGTAATCTGTAAAAA                                                                ]




>consensus_9104#0
ATTACTTGGGCCGGCAACCACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGA
GAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTG
ATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGC
CTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGACCCCAACTACGACCCCGACGAG
CCCACCGCCGCCGGCGCCGCCGCCAACGAGCCTCTCCTCGCGGACCTCTCCGCCGCCTCC
GCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCC
GTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTT
GCTTTCTATGTGAGCTAATTTCTGTGAGATGAGATGTTATCTTGGCAATCTATAATACAG
TTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGCAACGAGTGAGACTGTGACC
TTCATTTCCACAATCTGAGATATTTCTGTTCTGTAATCTGTAAAAATTGAGACTGATCCA
TCTCAATTTCCTATGGGAGGGGAGGCTACGCATTTCATTGCANAAAAAAN

consensusID : consensus_9104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [TCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTTTTCCTGTTGAGGATTGGAGGATTGTTTATTCCTTGGCAAATTCTTATAACTCACCAGTTATGATTCAGAGTTTCAGACAAAAAA]

[+] EMBL BI801871             [TCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTTTTCCTGTTGAGGATTGGAGGATTGTTTATTCCTTGGCAAATTCTTATAACTCACCAGTTATGATTCAGAGTTTCAGACAAAAAA]




>consensus_9104#1
TCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCCGTGTGTGTCCTTCTTGTCTGTTCATGT
GGTTCTTGGCTAAGAAATATGACAGATTCCTTGCTTTCTATGTGAGCTAATTTTTTCCTG
TTGAGGATTGGAGGATTGTTTATTCCTTGGCAAATTCTTATAACTCACCAGTTATGATTC
AGAGTTTCAGACAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9104#0      ATTACTTGGGCCGGCAACCACCTCCAGATCCGCCCACGCTTTCCCCTCGCCGGAGACGGA 60
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      GAAGAAGCCAGCTGTCGCCGGCGGCGAGGAGATCGGATGGGGGCGGTGGTGACGGCGGTG 120
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      ATAGCCATCGCGGCGGTGGTGCTGGGCTGGATCACCATCGAGATGGCCTGCAAGCCCTGC 180
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      CTCGACTCCGGCCGCCGCGCCATGGACCGCGCCCTCGACCCCAACTACGACCCCGACGAG 240
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      CCCACCGCCGCCGGCGCCGCCGCCAACGAGCCTCTCCTCGCGGACCTCTCCGCCGCCTCC 300
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      GCCGCCGCGCTGGCCAAGACCATCTGATCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCC 360
consensus_9104#1      ---------------------------TCCCCCCGCCGCCGCTGCCTTCAGTCGTCTTCC 33
                                                 *********************************

consensus_9104#0      GTGTGTGTGCCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTT 420
consensus_9104#1      GTGTGTGT-CCTTCTTGTCTGTTCATGTGGTTCTTGGCTAAGAAATATGACAGATTCCTT 92
                      ******** ***************************************************

consensus_9104#0      GCTTTCTATGTGAGCTAATTT----CTGT--GAGATGAGATG-----TTAT--CTTGGCA 467
consensus_9104#1      GCTTTCTATGTGAGCTAATTTTTTCCTGTTGAGGATTGGAGGATTGTTTATTCCTTGGCA 152
                      *********************    ****    ***  ** *     ****  *******

consensus_9104#0      ATCTATAATA------CAGTTATGATTCAGAGTTTCAGACACATGTTGATGTTTCTCTGC 521
consensus_9104#1      AATTCTTATAACTCACCAGTTATGATTCAGAGTTTCAGACAAAAAA-------------- 198
                      *  * * ***      ************************* *                 

consensus_9104#0      AACGAGTGAGACTGTGACCTTCATTTCCACAATCTGAGATATTTCTGTTCTGTAATCTGT 581
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      AAAAATTGAGACTGATCCATCTCAATTTCCTATGGGAGGGGAGGCTACGCATTTCATTGC 641
consensus_9104#1      ------------------------------------------------------------
                                                                                  

consensus_9104#0      ANAAAAAAN 650
consensus_9104#1      ---------