These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1246 fasta sequence [CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA] [+] EMBL AK070963 [CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATA ] [+] EMBL AK059560 [ TCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGACTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCA ] [+] EMBL AY222337 [ CCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATTACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGAAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA] [+] EMBL CF278761 [ tTCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAG ] [+] EMBL C74688 [ ACCANTCACCANNANGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGNAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGNNCACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGNCA ] consensusID : consensus_9111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF278760 [GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9111#0 CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCC 60 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 GCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACT 120 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 GCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGC 180 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 GCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGA 240 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 TGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGG 300 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 TCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAAT 360 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 CAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACT 420 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 TGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAA 480 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 TACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGA 540 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 ATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTC 600 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 GTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTT 660 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 GGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCC 720 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 CAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTAC 780 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 CGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGT 840 consensus_9111#1 ------------------------------------------------------------ consensus_9111#0 CTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACAC 900 consensus_9111#1 ---------------------------------------GGATTTTTTCCCATGTAACCC 21 ****** * ********* * consensus_9111#0 GGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGT 960 consensus_9111#1 GGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGT 81 ************** **** ** ** ****** ************************ ** consensus_9111#0 TTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACC 1020 consensus_9111#1 TTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCC 141 ** * ************* ********* * ** ** **** ***** ***** ** consensus_9111#0 GTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTC 1080 consensus_9111#1 GTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTC 201 *** ******** ***** * * ** ***** *** ** * *** ************ consensus_9111#0 CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTG 1140 consensus_9111#1 CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTG 261 ************************************** * ***** * ** ** * *** consensus_9111#0 TGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGT 1200 consensus_9111#1 GGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGG 321 * * ***** *** ** *** ** * ** ***** ** ******** ** **** *** consensus_9111#0 GACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA-------------- 1246 consensus_9111#1 GCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 381 * * *** ***** *** * * ******** consensus_9111#0 -------- consensus_9111#1 AAAAAAAA 389 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||