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Oryza sativa
cluster # 9111 cluster # 9111       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9111#0 length = 1246 sequences # 5  
consensus_9111#1 length = 389 sequences # 1  

consensusID : consensus_9111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1246
fasta sequence
                              [CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA]

[+] EMBL AK070963             [CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCCGCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATA                                                 ]
[+] EMBL AK059560             [                                                                             TCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACTGCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGACTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCA                                      ]
[+] EMBL AY222337             [                                                                                                                                CCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGCGCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGATGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGGTCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAATCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATTACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGAAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA]
[+] EMBL CF278761             [                                                                                                                                                                                                                                                                                                                                                                      tTCAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACTTGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAATACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGAATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTCGTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTTGGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCCCAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C74688               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACCANTCACCANNANGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGNAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGNNCACGGGATTTCTGACCATGTAACACGGCCTCAGCCAAGGTACCCAACACCAACGGNCA                                                                                                                                                                                                                                                                                                                         ]


>consensus_9111#0 CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCC GCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACT GCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGC GCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGA TGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGG TCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAAT CAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACT TGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAA TACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGA ATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTC GTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTT GGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCC CAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTAC CGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGT CTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACAC GGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGT TTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACC GTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTC CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTG TGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGT GACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA



consensusID : consensus_9111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence
                              [GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF278760             [GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9111#1 GGATTTTTTCCCATGTAACCCGGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGC CAGTAAACCTGTTTCCAGGGTTTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTT TTGGCCCTAACAAGGAAACCCGTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGC CCCCCAAATATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATT TTAAACAAAAATTTGGGGCTGGGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCC GTTTTAAGGGGGCAAAAAGGGGCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9111#0      CACGCGCCCACCCCACGCGCGTCACCGTCGCTCGCCCAAACTGCGGGCGCGTCGCACGCC 60
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      GCCCTCCCATCGTTTTCTCCCATTCTTTCCCCCTCCTCCTCGTGCAACCACCCAACCACT 120
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      GCAGCCAGCCACGAGCCGAGGAAGCCGAGGCCGAGGAGGAAGACGACGAAGACAAGTAGC 180
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      GCAAGGAACCCTCGAACCGGGAGGCCGCCGCGGCTCCGATCTGGGAGGGGGAGGTCGAGA 240
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      TGGTGCCCAGGGACAGGGTGAATGCCGCTGCCGCTGGTGGCGGCGGCGAGGGGAGGCTGG 300
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      TCCAGAGCGGTATAGTGAACAAGAAGTGTGATAAGAAGGCTCCAAAGAGAATCCATAAAT 360
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      CAGAGAGGGAGAAACTTAAGCGGGACAAGCAGAATGACCTCTTTAATGAGCTGGGAAACT 420
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      TGCTAGAACCTGACAGGCAGAACAATGGGAAGGCATGTGTACTGGGTGAAACTACACGAA 480
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      TACTAAAAGATTTACTTTCACAAGTGGAATCTCTCCGGAAGGAGAATAGTTCACTGAAGA 540
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      ATGAATCTCATTATGTTGCATTGGAGAGAAATGAACTGCACGACGATAACAGCATGCTTC 600
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      GTACTGAAATCTTGGAGCTTCAAAACGAGCTTAGGACGCGGATGGAAGGCAATCCTGTTT 660
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      GGAGTCATGTAAACACCAGACCAGCTCTCAGGGTACCTTATCCGACAACCGGAGTGTTCC 720
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      CAGTACAGCACCTGCCACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTAC 780
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      CGGTTATCATCGAGCAGCACTATGCCGCCACGCCAAGAGAACTTCAGCTCTTCCCTGAGT 840
consensus_9111#1      ------------------------------------------------------------
                                                                                  

consensus_9111#0      CTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGATTTCTGACCATGTAACAC 900
consensus_9111#1      ---------------------------------------GGATTTTTTCCCATGTAACCC 21
                                                             ****** *  ********* *

consensus_9111#0      GGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGT 960
consensus_9111#1      GGCCTCAGCCAAGGGACCCCACCCCCACGGCCCCTTTGCCAGTAAACCTGTTTCCAGGGT 81
                      ************** **** ** ** ****** ************************ **

consensus_9111#0      TTCCAGGAAGACAAGATCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACC 1020
consensus_9111#1      TTTCCGGAAGACAAGATCCCCAATGTAGCCGGGGGGTTTTTGGCCCTAACAAGGAAACCC 141
                      ** * *************  ********* * **   ** **** ***** *****  **

consensus_9111#0      GTATAGGTAGATCTTAGGTACACTACATAACGAGAGGTCCACACAATGATTTGAGAATTC 1080
consensus_9111#1      GTAAAGGTAGATTTTAGGGCCCCCCCAAAACGAAAGGGCCCCCCAAATATTTGAGAATTC 201
                      *** ******** *****  * *  ** ***** *** ** * ***  ************

consensus_9111#0      CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCGACTG 1140
consensus_9111#1      CTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATTTTAAACAAAAATTTGGGGCTG 261
                      ************************************** * ***** * ** ** * ***

consensus_9111#0      TGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGT 1200
consensus_9111#1      GGTTTATGGGGAGCCCCCAATTTGGAAATTTGAATTTCCGTTTTAAGGGGGCAAAAAGGG 321
                       * * ***** *** ** *** ** * ** ***** ** ******** ** **** *** 

consensus_9111#0      GACATTCAGAAAAGTTTGAAATGCTTTGATTATTCTGTAAAAAAAA-------------- 1246
consensus_9111#1      GCCCTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 381
                      * * *** *****     ***       *  *      ********              

consensus_9111#0      --------
consensus_9111#1      AAAAAAAA 389
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)