These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1813 fasta sequence [TCGGGGAGCTGCTGCTCCGCGCGGCGGCGATGGTGCCAGCGGAGCACTACGCGCTCGCGGCGCTCGCCGTGGTGTCGGTCCTCGCGTACGGGTTCCTGGAGCTGCACTTCCTCGGGGACCTCCTCCGCGGGTTCCGCTGCGGCCGCGTCGAGCTCACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTAGCCTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTCAAAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTGTAGTTATTGTACCTGGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTTATTCCATGGCAACGAAGGGGTGTAACACTGTTGTAAGCAATCACAGGGGTCTTGGTGGTGTGTCCATTACTTCAGATTGCCTCTACAATGCTGGATGGACAGAAGATCTCCGAGAAGTCATTAATTATCTCCATCACAAATATCCAAAGGCTCCAATGCTCTGTGTTGGTACAAGCATAGGGGCCAACATTGTGGTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCCGCATCTATTTGTTCTCCCTGGGATCTGGTGGTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTTTTACGACAAAGCCCTTGCCTTTGGTCTTAAGGGATATGCAAAGCTGCATGAACCTGTGTTGGTTCGAATTGCAAATTGGGAAGGTATTAAAAAGTCACGCTCTATCCGGGAATTTGACCACCATGCCACCTGCATGGTTGCAAAATATGAGACAGTAGATACCTACTACCGCCGTTGCAGCAGTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGGGCCAACAAGAACATTGTTTTGGCTACTACTCCGAATGGCGGTCATCTTGCATTCTTTCAAGGACTAACTGCTGGAAGACTATGGTGGGTCGGAGCTGTTTCTGAGTTCCTCTTCGCTCTGCTTGACAGTAAATACATGCATCAGCAAAAGGCACAAGACCATATTTTGCGTTCTTCCTTGGAGTCGTCCATCGATAAGAGCCCATATGTCAACGTCATGGAAGATGGAATGATAGCTCCGGTGACAGATGATGGCCCTTGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAGATAATGGGGATTTTACGCAACAGAATGAACACACCAGGGAAGCAGATGATAAAAATATCACAGAAGTAAATGCAATGCCTTCCCAAAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGGAACACTACGTTGGTAAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAACTCACTCGGTACCAGGGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCATGGCCACTCCTTGGTTCCTTAGCTTTTATCGCATTTAGGAAAAAGTTCAGGAATAATTTGCTAGCTAAGTGGCTGAGAAGATAAATAAGTTGTGTTCCAACAGTTTTTTTTTTTCATTTGCATCATGTAAAACTCAGAATTGTTTAAAGGCTTGAAAAGCCATTCGNTCTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064743 [TCGGGGAGCTGCTGCTCCGCGCGGCGGCGATGGTGCCAGCGGAGCACTACGCGCTCGCGGCGCTCGCCGTGGTGTCGGTCCTCGCGTACGGGTTCCTGGAGCTGCACTTCCTCGGGGACCTCCTCCGCGGGTTCCGCTGCGGCCGCGTCGAGCTCACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTAGCCTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTCAAAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTGTAGTTATTGTACCTGGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTTATTCCATGGCAACGAAGGGGTGTAACACTGTTGTAAGCAATCACAGGGGTCTTGGTGGTGTGTCCATTACTTCAGATTGCCTCTACAATGCTGGATGGACAGAAGATCTCCGAGAAGTCATTAATTATCTCCATCACAAATATCCAAAGGCTCCAATGCTCTGTGTTGGTACAAGCATAGGGGCCAACATTGTGGTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCCGCATCTATTTGTTCTCCCTGGGATCTGGTGGTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTTTTACGACAAAGCCCTTGCCTTTGGTCTTAAGGGATATGCAAAGCTGCATGAACCTGTGTTGGTTCGAATTGCAAATTGGGAAGGTATTAAAAAGTCACGCTCTATCCGGGAATTTGACCACCATGCCACCTGCATGGTTGCAAAATATGAGACAGTAGATACCTACTACCGCCGTTGCAGCAGTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGGGCCAACAAGAACATTGTTTTGGCTACTACTCCGAATGGCGGTCATCTTGCATTCTTTCAAGGACTAACTGCTGGAAGACTATGGTGGGTCGGAGCTGTTTCTGAGTTCCTCTTCGCTCTGCTTGACAGTAAATACATGCATCAGCAAAAGGCACAAGACCATATTTTGCGTTCTTCCTTGGAGTCGTCCATCGATAAGAGCCCATATGTCAACGTCATGGAAGATGGAATGATAGCTCCGGTGACAGATGATGGCCCTTGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAGATAATGGGGATTTTACGCAACAGAATGAACACACCAGGGAAGCAGATGATAAAAATATCACAGAAGTAAATGCAATGCCTTCCCAAAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGGAACACTACGTTGGTAAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAACTCACTCGGTACCAGGGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCATGGCCACTCCTTGGTTCCTTAGCTTTTATCGCATTTAGGAAAAAGTTCAGGAATAATTTGCTAGCTAAGTGGCTGAGAAGATAAATAAGTTGTGTTCCAACAGTTTTTTTTTTTCATTTGCATCATGTAAAACTCAGAATTGTTTAAAGGCTTGAAAAGCC ] [-] EMBL CB238476 [ CCACCCGGCCTCCGAGATCTACCACCGCGTAGCCTCCAAGTGCCGCCCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTCAAAGGGTTCAGATGGGATCTTTTCTGAGGATGTTTCAGCACCACTTGTAGTTATTGTACCTGGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTTATTCCATGGCAACGGAGGGGTGTAACACTGTTGTAAGC ATCACAGGGGTCTTGGTGGTGTGTCCATTACTTCAGATTGCCCCTAC ATGCTGGATGGACAGAAGATCTCCGAG ] [+] EMBL AU163160 [ cgagCCGAGATCTACCACCGCGTAG CTCCAAGTGCCGNTCCCTNCACGGCAGGTATCTGGCGACGNCTTGGNTCGCCAGNCCACANTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCAATTGTACACAGTACATGNTGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTCAAAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTGTAGTTATTGTACCTGGATTAACTAGTGATTCTNCTGCTGCTTATGTAAANCACATGGGTTATTCCATGGCA ] [+] EMBL AU086012 [ GTAAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAACTCACTCGGTACCAGGGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCATGGCCACTCCTTGGTTCCTTAGCTTTTATCGCATTTAGGAAAAAGTTCAGGAATNATTTGCTAGCTAAGTGGCTGAGAAGATAAATAAGTTGTGTTCCAACAGTTTTTTTTTTTCATTTGCATCATGTAAAACTNAGAATTGTTTAAAGGCTTGAAAANCCATTCGNTCTCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [ACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTANCTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGTCTGCAGCACTCATGAATGAATAGGCAGCCAGAAACCCCACACCAGTGTGACTGTCACTACGATGATCTAGTATGACACTTCCTCAGAATGCAAATTGAGCTCCAACATCCAGAGGTTACAGGTATAGCCAAGAAGACTGAAGCTCTGAATGAGGATGATGTGCCTGTCCACAATCAAAACATTAAGGATTTGTCACCTTCGCACCAACAAAACAGTGAAACAAACATGCACCTGTTGCTTCTCTGCCCATACGCCCATGAAATCTGGAAAACAGTCCTATATGGGCAAAATGCACCATCATGACGACAGCCAAACGTCGATACTTTGACATTCTAGAGGATTTGTGGCATCAAGATTGCTCATGCTTGCAAAAGGAGTGGAGGTGCAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGAC] [+] EMBL AU086013 [ACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTANCTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGTCTGCAGCACTCATGAATGAATAGGCAGCCAGAAACCCCACACCAGTGTGACTGTCACTACGATGATCTAGTATGACACTTCCTCAGAATGCAAATTGAGCTCCAACATCCAGAGGTTACAGGTATAGCCAAGAAGACTGAAGCTCTGAATGAGGATGATGTGCCTGTCCACAATCAAAACATTAAGGATTTGTCACCTTCGCACCAACAAAACAGTGAAACAAACATGCACCTGTTGCTTCTCTGCCCATACGCCCATGAAATCTGGAAAACAGTCCTATATGGGCAAAATGCACCATCATGACGACAGCCAAACGTCGATACTTTGACATTCTAGAGGATTTGTGGCATCAAGATTGCTCATGCTTGCAAAAGGAGTGGAGGTGCAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGAC] consensusID : consensus_9117#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [AANANCATGGCCACTCCTTGGNTCCTTANCTTTTANCGCATTTAGGAAAAAGTTCAGGAANAANTTGCTANCTAANTGGCTGANAAGATAAANAANTTNTGTTCCAANAGTTTTTTTTTTTCATTTGCATCATGTAAAACTCAGAANTGTTTAAAGGCTTGAAAANCCATTCGATCTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095844 [AANANCATGGCCACTCCTTGGNTCCTTANCTTTTANCGCATTTAGGAAAAAGTTCAGGAANAANTTGCTANCTAANTGGCTGANAAGATAAANAANTTNTGTTCCAANAGTTTTTTTTTTTCATTTGCATCATGTAAAACTCAGAANTGTTTAAAGGCTTGAAAANCCATTCGATCTCAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9117#0 TCGGGGAGCTGCTGCTCCGCGCGGCGGCGATGGTGCCAGCGGAGCACTACGCGCTCGCGG 60 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 CGCTCGCCGTGGTGTCGGTCCTCGCGTACGGGTTCCTGGAGCTGCACTTCCTCGGGGACC 120 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TCCTCCGCGGGTTCCGCTGCGGCCGCGTCGAGCTCACCTTCCACCCGGCCTCCGAGATCT 180 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ACCACCGCGTAGCCTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGC 240 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCA 300 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 CATACAAAAGGCAATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGC 360 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TTGCCACTGATTCAAAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTG 420 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TAGTTATTGTACCTGGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTT 480 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ATTCCATGGCAACGAAGGGGTGTAACACTGTTGTAAGCAATCACAGGGGTCTTGGTGGTG 540 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TGTCCATTACTTCAGATTGCCTCTACAATGCTGGATGGACAGAAGATCTCCGAGAAGTCA 600 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TTAATTATCTCCATCACAAATATCCAAAGGCTCCAATGCTCTGTGTTGGTACAAGCATAG 660 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 GGGCCAACATTGTGGTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTG 720 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 CCGCATCTATTTGTTCTCCCTGGGATCTGGTGGTGGGCGACCGATTTATTTCCCGCAAGC 780 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TTGTGCAGCGGTTTTACGACAAAGCCCTTGCCTTTGGTCTTAAGGGATATGCAAAGCTGC 840 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ATGAACCTGTGTTGGTTCGAATTGCAAATTGGGAAGGTATTAAAAAGTCACGCTCTATCC 900 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 GGGAATTTGACCACCATGCCACCTGCATGGTTGCAAAATATGAGACAGTAGATACCTACT 960 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ACCGCCGTTGCAGCAGTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCA 1020 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGGGCCA 1080 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ACAAGAACATTGTTTTGGCTACTACTCCGAATGGCGGTCATCTTGCATTCTTTCAAGGAC 1140 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 TAACTGCTGGAAGACTATGGTGGGTCGGAGCTGTTTCTGAGTTCCTCTTCGCTCTGCTTG 1200 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------------------------------------------------------ consensus_9117#0 ACAGTAAATACATGCATCAGCAAAAGGCACAAGACCATATTTTGCGTTCTTCCTTGGAGT 1260 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 ------------ACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTANCTCCAAGTGCC 48 consensus_9117#0 CGTCCATCGATAAGAGCCCATATGTCAACGTCATGGAAGATGGAATGATAGCTCCGGTGA 1320 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 GCTCCCTCCACGGCAGGT-ATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACA 107 consensus_9117#0 CAGATGATGGCCCTTGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAG 1380 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 CTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCAC-ATACAAAAGGTCTGCAGCA-- 164 consensus_9117#0 ATAATGGGGATTTTACGCAACAGAATGAACACACCAGGGAAGCAGATGATAAAAATATCA 1440 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 CTCATGAATGAATAGGCAGCCAGAAACCCCACACCAGTGTGACTGTCACTACGATGATCT 224 consensus_9117#0 CAGAAGTAAATGCAATGCCTTCCCAAAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGG 1500 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 --------AGTATGACACTTCCTCAGAATGCAAATTGAGCT-----CCAACATCCAGAGG 271 consensus_9117#0 AACACTACGTTGGTAAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAAC 1560 consensus_9117#2 ------------------------------------------------------------ consensus_9117#1 T------TACAGGTATAGCCAAGAAGACTGAAGCTCTGAATGAGGATGATGTGCCTGTCC 325 consensus_9117#0 TCACTCGGTACCAGGGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCAT 1620 consensus_9117#2 ----------------------------------------------------AANANCAT 8 consensus_9117#1 ACAATCAAAACATTAAGGATTTGTCACCTTCGCACCAACAAAACAGTGAAACAAACATGC 385 ** consensus_9117#0 GGCCACTCCTTGGTTCCTTA-GCTTTTATCGCATTTAGGAAAAAGTTC---AGGAATAAT 1676 consensus_9117#2 GGCCACTCCTTGGNTCCTTA-NCTTTTANCGCATTTAGGAAAAAGTTC---AGGAANAAN 64 consensus_9117#1 ACCTGTTGCTTCTCTGCCCATACGCCCATGAAATCTGGAAAACAGTCCTATATGGGCAAA 445 * * *** * * * * * ** * * *** *** * * * ** consensus_9117#0 TTGCTAGCTAAGTGGCTGAGAAGATAAATAAGTTGTGTTCCAACAGTTTTTTTTTTTCAT 1736 consensus_9117#2 TTGCTANCTAANTGGCTGANAAGATAAANAANTTNTGTTCCAANAGTTTTTTTTTTTCAT 124 consensus_9117#1 ATGC-ACCATCATGAC---GACAGCCAAACGTCGATACTTTGACATTCTAGAGGATTTGT 501 *** * * ** * * ** * * * * * * ** * consensus_9117#0 TTGCATCATGTAAAACTCAGAATTGTTTAAAGGCTTGAAAAGCCATTCGNTCTCAAAAAA 1796 consensus_9117#2 TTGCATCATGTAAAACTCAGAANTGTTTAAAGGCTTGAAAANCCATTCGATCTCAAAAAA 184 consensus_9117#1 G-GCATCAAG-ATTGCTCATGCTTGCA-AAAGGAGTGGAGGTGCAGGCAATTGTACACAG 558 ****** * * **** ** ***** ** * ** * * * * * consensus_9117#0 AAAAAAAAAAAAAAAAA------------ 1813 consensus_9117#2 AAAAAAAAAAAAAAAAA------------ 201 consensus_9117#1 TACATGATGGTGGGACCATTGCTTTGGAC 587 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||