These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCCCAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACCTGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCCCCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCACC] [+] EMBL CF298799 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCCCAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACCTGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCCCCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCACC] consensusID : consensus_913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTCACCCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACCTGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCCCACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAACCCACATTATTTGGGTGGCCCCCAC] [+] EMBL CF335126 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTCACCCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACCTGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCCCACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAACCCACATTATTTGGGTGGCCCCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_913#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_913#1 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45 ********************************************* consensus_913#0 TTTTTTTGGCTAAATAACCTGGGGGGAAAATTTTTTCCCCCTTCACCCCTTGTAAGGGCC 120 consensus_913#1 TTTTTTT-----------------------TTTTTTACCCCTTCACCCCATGTAAGGGCC 82 ******* ****** ************ ********** consensus_913#0 CAAGGGCAAATTTTTTAAACCCTGCAGAACTTCCCCCTTTAGGGGGGGTTAATTTTAACC 180 consensus_913#1 CAAGGGCAAATTTTTTAAAACCTGCAGAACTTCCCCTTTTAGGGGGGGTTAATTTTAACC 142 ******************* **************** *********************** consensus_913#0 TGGGCGAAACCAGGGCCAAAACTGTTCCCTGGGGAAAATTGTTATCCCCTCAAAATTCCC 240 consensus_913#1 TGGGCGAAATCAGGGCAAAAACTGTTCCCTGGGAAAAATTGTTTTCCCCTCAAAATTCCC 202 ********* ****** **************** ********* **************** consensus_913#0 CCCAAAATACAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCTAAGGAGGGACCCAC 300 consensus_913#1 CACAAAATACAACCCGGAACCATAAAGGGAAAACCCGGGGGGCCCTAAAGAGGGACCTAA 262 * ************** ***** ************************* ******** * consensus_913#0 C------------------------ 301 consensus_913#1 CCCACATTATTTGGGTGGCCCCCAC 287 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||