cluster # 914

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Oryza sativa
cluster # 914 cluster # 914 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_914#0 length = 475 sequences # 1

consensus_914#1 length = 148 sequences # 1

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA]

[+] EMBL BI804996             [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA]




>consensus_914#0
TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCT
ATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGC
GGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTT
GTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGT
CCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTG
TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT
GCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCT
GCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA

consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA]

[+] EMBL AU222489             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA]




>consensus_914#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACAC
TGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTAT
TATTATTATTTTCGCTTTCTTTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCT 60
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      ATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGC 120
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTT 180
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGT 240
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      CCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTG 300
consensus_914#1      ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45
                                    **    *    *****  **** ****** **** ********* 

consensus_914#0      TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 360
consensus_914#1      TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 105
                     ************************************************************

consensus_914#0      GCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCT 420
consensus_914#1      GCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA----------------- 148
                     ** ***********************************                      

consensus_914#0      GCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA 475
consensus_914#1      -------------------------------------------------------