These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA] [+] EMBL BI804996 [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA] consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA] [+] EMBL AU222489 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_914#0 TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCT 60 consensus_914#1 ------------------------------------------------------------ consensus_914#0 ATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGC 120 consensus_914#1 ------------------------------------------------------------ consensus_914#0 GGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTT 180 consensus_914#1 ------------------------------------------------------------ consensus_914#0 GTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGT 240 consensus_914#1 ------------------------------------------------------------ consensus_914#0 CCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTG 300 consensus_914#1 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45 ** * ***** **** ****** **** ********* consensus_914#0 TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 360 consensus_914#1 TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 105 ************************************************************ consensus_914#0 GCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCT 420 consensus_914#1 GCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA----------------- 148 ** *********************************** consensus_914#0 GCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA 475 consensus_914#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||