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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 914 cluster # 914       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_914#0 length = 475 sequences # 1  
consensus_914#1 length = 148 sequences # 1  

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA]

[+] EMBL BI804996             [TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTTGTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA]


>consensus_914#0 TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCT ATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGC GGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTT GTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGT CCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTG TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT GCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCT GCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA



consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA]

[+] EMBL AU222489             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA]


>consensus_914#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACCTGTACAC TGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCTGCAAAGCAGCATTAT TATTATTATTTTCGCTTTCTTTTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      TCGCTCGGCGCCCCCGCCGCCGCGCTCCGGCGGAATCACCCGAGAGCGCGCCGACAAGCT 60
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      ATCGTCGCCGCCGGCGCTGCGCGACACCTCCGGCACGCGAACCACACGGCGGCGGCTCGC 120
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GGTGGCGGCAGCGGCGGCGACGACGAAACCGACCATTGGCCGGTGGTGTATAGCCTTGTT 180
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GTATCTACTACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGT 240
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      CCATTACCATCCTTGTTGAGCTCGAATTTTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTG 300
consensus_914#1      ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45
                                    **    *    *****  **** ****** **** ********* 

consensus_914#0      TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 360
consensus_914#1      TTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAATTCAGATTGAGCT 105
                     ************************************************************

consensus_914#0      GCCAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCT 420
consensus_914#1      GCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTAAAAA----------------- 148
                     ** ***********************************                      

consensus_914#0      GCTTCATGTTGGCCAAAGGGAAATAATAGTACTAGTAATGTACCCAAAAAAAAAA 475
consensus_914#1      -------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)