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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1905 fasta sequence
[CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGCCGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGCGCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGTGTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCGGGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCACGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGCAGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAAGAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAAGGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCGAGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG-TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC]
[+] EMBL AK066803 [CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGCCGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGCGCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGTGTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCGGGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCACGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGCAGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAAGAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAAGGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCGAGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCATCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC]
[+] EMBL CF324460 [ GGGCGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGGCGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGCCAGGAAGGAGAAGCTCGGTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGCGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGC ]
[+] EMBL CB626691 [ CCCTTCCTACTCTACCTCGTCCCCTCCCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCATTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTGCGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGCGATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCTTAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTTGAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGNTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGAT ]
[-] EMBL CB626692 [ ATATTGAGCAACCCTCAAATAACTATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGGAAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAACACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCTTGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAGTGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTG TGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCT ]
consensusID : consensus_9155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[CAGCCAGTGTTGGGCTGATTAAGTGTCCTTGTGAAAGACTGGGAGAACATAACAACGGC-AAATTTTGAGGACTTCGACACCTGTGTTGGTTGCAGACTTGCCTCCT-TCAGTTGACGAATACA-TTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGC-AAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA]
[+] EMBL BQ908174 [CAGCCAGTGTTGGGCTGATTAAGTGTCCTTGTGAAAGACTGGGAGAACATAACAACGGC AAATTTTGAGGACTTCGACACCTGTGTTGGTTGCAGACTTGCCTCCT TCAGTTGACGAATACA TTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGC AAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA]
[+] EMBL BI812591 [ gagAAGACTGGGAGACAATAACAACGGCAAAATTTTGAGGACTTCGACA CTGTGTTGGTTGCAGACTTGCCTCCTGTCAGTTGACGAATACAGTTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCGAAAACCCTT TCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATGCGATCAAGTCCTAGTCTGTGAGAA AAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9155#0 CGGGGTCGCGGCGGCTAACCGTCTCTCTCGCCGCCGTCTCGCACCTCGCGTCGCCGCCGC 60
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CGCCGCGAGTGTCGGAGCGGAGGAGAAGGGGAGGGGGGCCATGGCGAAGGGCGACGACGC 120
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GCTGGCGCGGAAGCGCAACAAGGTGCGGCGGAAGCGGATGCGCAGCAGCGAGAACGCCGT 180
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GTCGGCCCGCGTCGCCGGCATCATCGCCTCCAAGCGCCGCCGCAAGTCCGGCAAGCGGCG 240
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GGCCTGCGAGGGCATGTGCTTCTCCCTCCCCACCCCGGAGGACCCCTTCAACGACCGCCA 300
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CGGCAAGAAGCGGAAGGGCGACGACGAGCCGACCGGAGACGCCCCCGCCGCCGCCGCCGC 360
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 AGGCAGGGACGAATCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATTCGAGCGCCAA 420
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GAAGCAGCCGGCGAGGGAGGCCGCCGCCGCCGCCGCCGCGAACGCCAAGTCTAGGGAGAA 480
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GGACGGGGCGGAGTACGACCGGCCGTCCAAGTTCCTGGTGGTCTGCCTCAACGCCATCCG 540
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 AGACGCGGCGGCGTCCGAGGACGGCGGCGGCGGCGGCATCCACGACACCGGGTCGTGGGG 600
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CGTGGAGCTCTGGAATTGCTGCTCGGCTGCGCCGCCTACGCACGTGCTCGACACCAGCGG 660
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CGAGTGCGCCACCCGGGAGAAGACGGCTTGGCTCGTCTCCACAGCCTGCGACATCGTCGC 720
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CAGGAAGGAGAAGCTCGCTGTGGTCGTCTCTTGCCCCTTCCTACTCTACCTCGTCCCCTC 780
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CCAGGAAAAGGCCGTGCAAGTGCGTTCGATTTGCAAGCCTCTGAAATCACTTGGTATCCA 840
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TTCCGTCAGTCTGCATCCCGGCGCTTCCATTGAACACCAGATTTCTGGATTAAAGAGTTG 900
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 CGAACCGGAGTTCCTTATATCCACGCCAGAGAGGCTGCTTGAACTAATAGCTTTAAAGGC 960
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 GATTGACATATCAGGCGTATCGATGCTGGTGATTGATGGTCTGAAGTGTTTCACGGACCT 1020
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TAATGTCAGCGACAAGCTTTGTTCTATTAGGGATGCCATATTGAGCAACCCTCAAATAAC 1080
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TATATTCAGTGACCCGTCTGACCGAAGGGTAGCTGCACTGGCAACAAAACTAGTCGGTGG 1140
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 AAAAAAGATCACAAGGCTTTGTACGAATGATTCAGTTACTTCTAGAGGTGCATTCATAAC 1200
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 ACAAAAGATACACATATGCCCATCAAAGGACCAAAAGGCACCGAAGGTGAAGGAAATTCT 1260
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TGAACAAATTCTAAATGATCATGCTAGAAAGACTGCAAAGGTCCTACTGGTAACCGCAAG 1320
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TGATCATGAAGCACAGCATCTGTCATCGTCCTTGAAATTGCAAAATTGTACCGTGACCAA 1380
consensus_9155#1 ------------------------------------------------------------
consensus_9155#0 TGACTCGCATGGCAACTCTTTTACCATATGCAGC-AGTGTTGGGCTGATTAA-TGTCCTT 1438
consensus_9155#1 ------------------------------CAGCCAGTGTTGGGCTGATTAAGTGTCCTT 30
**** ***************** *******
consensus_9155#0 GTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACAC-TGTGTTGGT 1497
consensus_9155#1 GTGAAAGACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACCTGTGTTGGT 90
************************************************** *********
consensus_9155#0 TGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCA 1557
consensus_9155#1 TGCAGACTTGCCTCCTTCAGTTGACGAATACATTGAAATCCTCGCTGGTGCAAGCTGTCA 150
************************************************************
consensus_9155#0 TGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACC 1617
consensus_9155#1 TGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTCTGCTTGCAAAACC 210
************************************************************
consensus_9155#0 CTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGC 1677
consensus_9155#1 CTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGC 270
************************************************************
consensus_9155#0 ATCCTCATAGCAGGATCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATT 1737
consensus_9155#1 ATCCTCATAGCAGGAGCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATT 330
*************** ********************************************
consensus_9155#0 CATGGTTCTTCCAGTCACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCT 1797
consensus_9155#1 CATGGTTCTTCCAGTGACTAAACATTTTTGTCAGTTTACTGTTCCTTATCATGTAATTCT 390
*************** ********************************************
consensus_9155#0 CACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATG 1857
consensus_9155#1 CACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTGTATTTTTTGAATG 450
************************************************************
consensus_9155#0 CGATCAAGTCCTAGTCTGTGAGAACCAATTGCTTTTGCATTCATTAAC 1905
consensus_9155#1 CGATCAAGTCCTAGTCTGTGAGAACCCAAAAAAAAAA----------- 487
************************** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||