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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence
[TGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAGGGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCTTGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAACCAAACTCTAGGTTTATGATAGGACCTAACTGTGGGTGTGTGTCGAATTGCTATTAGTTTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACTTATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTGTTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTATTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTATTTACGTGTGTCTTACGTCAGACGCTTC]
[+] EMBL BE040707 [TGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAGGGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCTTGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAACCAAACTCTAGGTTTATGATAGGACCTAACTGTGGGTGTGTGTCGAATTGCTATTAGTTTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACTTATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTGTTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTATTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTATTTACGTGTGTCTTACGTCAGACGCTTC]
consensusID : consensus_916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence
[CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGGGCAATGATTACAACCTACCTCTTCTCAGCGGGGTGTCCATTACAAAGATTCGCAGCTTCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAGCCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGATA]
[+] EMBL CB659053 [CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAGGAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGTGCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTTTGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGAGCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTCCGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCCGTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGGGCAATGATTACAACCTACCTCTTCTCAGCGGGGTGTCCATTACAAAGATTCGCAGCTTCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAGCCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_916#0 -----------------------------------TGGATTCCTCCTCCACCTCCGGGAG 25
consensus_916#1 CCTTTTCTCCGTTCATCTCGAGCAGAGGAGAGGAATGGATTCCTCCTCCACCTCCGGGAG 60
*************************
consensus_916#0 GAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGT 85
consensus_916#1 GAAGGGAGGAGGACTCCTCCTCTCGCCGCCGCCGGCGGCGGTAGTTGTGGCGGTGGCGGT 120
************************************************************
consensus_916#0 GCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTT 145
consensus_916#1 GCTCCTGTCGGCGGCAGAGGCGGCGACGGAGGAGCCGTGCTACCCGCGGCTGTTCAGCTT 180
************************************************************
consensus_916#0 TGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGA 205
consensus_916#1 TGGGGACTCGCTGACGGACACGGGCAACTTCGCCTTCATCTACGGCAACGACTCCCGCGA 240
************************************************************
consensus_916#0 GCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTC 265
consensus_916#1 GCCGGCGCTCCGCCCGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGAAGATTCTC 300
************************************************************
consensus_916#0 CGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCC 325
consensus_916#1 CGACGGCCGCCTCGTCGTCGATTTCATCGCGGACGCGCTGGGGCTGCCGTTCGTGCGGCC 360
************************************************************
consensus_916#0 GTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGG 385
consensus_916#1 GTACTTGAGCGGGCGGACCGCGGGGGACTTCGCATGCGGGGCCAACTTCGCGGTGGGCGG 420
************************************************************
consensus_916#0 CGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGT 445
consensus_916#1 CGCCACGGCGCTCAGCCCGGCCTTCTTCCGGGCGAGAGGGGTGCCCATGGCTGACATCGT 480
************************************************************
consensus_916#0 GCCCCTGGACATGGAGATGAAGTGGTTTCGGGATCTGCTGAAACTGCTCTGCCCCGGCGA 505
consensus_916#1 GCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGA 540
** *** *********************** *****************************
consensus_916#0 CCTGGCCGGGTGCACGGGCTTGATGAATCAATGTGCTGTTGGCTGAGCGGAAAAATTGAG 565
consensus_916#1 CCTGGCCGGTTGCACAGGCATGATGAATCAATCTCTTTTC--CTGGTCGGAGAAATTGGG 598
********* ***** *** ************ * * * *** **** ****** *
consensus_916#0 GGCCATGATGACAACCTACCTGTTGTGGAGTGGGGTGAGCATTGCAAAACATTGGTAGCT 625
consensus_916#1 GGCAATGATTACAACCTACCTCTTCTC-AGCGGGGTGTCCATTACAAAG-ATTCGCAGCT 656
*** ***** *********** ** * ** ****** **** **** *** * ****
consensus_916#0 TGACTGGCGGCGCCATTCTGCAAATATGTGTCCCAATCACCTGATGCAGTGGATTTGAAA 685
consensus_916#1 TCACTCCGAGTGTCATTGCCAAAATTTCTTCTACAATCACCGAATTGATTGGGCTTGGAG 716
* *** * * **** **** * * ******** ** * *** *** *
consensus_916#0 CCAAACTCTAGGTTTATGATAG-GACCTAACTGT-GGGTGTGTGTCGAATTGCTATTAGT 743
consensus_916#1 CCAAGACGCTGGTTGTTCCTGGTAACCTCCCCATTGGATGTGTTCCAAATTACCTCATGA 776
**** **** * * * **** * * ** ***** * **** * *
consensus_916#0 TTCTGTGCACGTGGCACGGTTATTTTGTGTGTGTACCAGTCGTATCGTGTATGCCAGACT 803
consensus_916#1 TA---------------------------------------------------------- 778
*
consensus_916#0 TATCGTTCCTGTCTTGTGCGTCAGCGTCTTGATATTGCATGTCCATATTTCACGATACTG 863
consensus_916#1 ------------------------------------------------------------
consensus_916#0 TTCTTTGTTCTGTTTGACTATATTTACTCATACGCGCTAAATAAGATATACGTCTGTTTA 923
consensus_916#1 ------------------------------------------------------------
consensus_916#0 TTCCGGCTCACCTCACTATACTAAGACTACGTCCTCTTGTGTTACGGTACATTTCTTGTA 983
consensus_916#1 ------------------------------------------------------------
consensus_916#0 TTTACGTGTGTCTTACGTCAGACGCTTC 1011
consensus_916#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||