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Oryza sativa
cluster # 9160 cluster # 9160       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9160#0 length = 1950 sequences # 4  
consensus_9160#1 length = 650 sequences # 1  
consensus_9160#2 length = 608 sequences # 1  

consensusID : consensus_9160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1950
fasta sequence
                              [GCCTCCGAGCTCGCCCGCGCGGCGGCGCCGGGGTTCGCGCCATTGCTCGTCTCGCTCCTCCGCCGCCTCCCCTTCCCCGGCGACGCCCGCCTGCTCGATATCTTCCACGAGCACGCCTCCTTCCTCGCCGACGAAGAGCCCCAGCTCCTCGCCTCCGCCGTCTTCGCCTTCCTCCGCCTCCTCGCCAAGAACCGCCTCGATCCGGCCCCGCAGTGTCTCGAGTGCAGCGACTGTGGCGAGTGCAAGAACGCGAAGAATCTTGCAGGATGCAGGGAGAATCTGGTGTCGTTTTGCGCCTCCGTGTTGCGGGATCACACCCAAGTGTGTGAGCTGATCGGGAGGGACCTCGTGAGGTGTCTCCATGAACTGGTGCTCGTGCAGGAGTTCCATGAACTGTGGAAGGACTCGATGCTGGGCCGTGCGGCGGAGATCTGCCGCATTGGCATGCCGGGTTGGTGCACCGCGATGGCCGTCTCACCGGAGATGGAGACGCAGCTGCTGTTCATGATGAACAATGTGAGGTGGGGGAATCAGAAGAGGTACCAGCTGTGGTTTGCGAGGAAGCATTTGATGGTGCCTGGAGGGGAGGAGAGGATACCCGACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGTGTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTGCAGGCGAATGCAAAGGTTGCGCTGTTCTATGACTGGTTGTTTTTCGACGAGGGTAAGGGCAATCTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACTGATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGGAGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTGAAGGATGGAAATGGAATACATTTAACT-GGACACAATATGTGCTTCATGCCATGTATTT-ACCT-TTGTTTT-AAATATAACAAATTCATGTACAGCAGAAAACTAGGTCTTCATACAAATTTACAATCT-GCCTGAACTGATTGAAGAAACCTCAATATGAGCTTTT-GGATGCTACAAGCCTAAGACAAAAATA-TACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACTGCATCCTTGTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAGCCA-CAGGTGTATGTGTGGATGAATTTCTCCTGAGTTATAGGAGTTCATCCGATTTAAGTAGGCCACAATTATGCACTTGTAAATATTTT-GTAACTATCCCAGCTTTT-GTTATTCAATAGTAAAATCTCTTTCATGGTAGAAAAAAAAAAA]

[+] EMBL AK107165             [GCCTCCGAGCTCGCCCGCGCGGCGGCGCCGGGGTTCGCGCCATTGCTCGTCTCGCTCCTCCGCCGCCTCCCCTTCCCCGGCGACGCCCGCCTGCTCGATATCTTCCACGAGCACGCCTCCTTCCTCGCCGACGAAGAGCCCCAGCTCCTCGCCTCCGCCGTCTTCGCCTTCCTCCGCCTCCTCGCCAAGAACCGCCTCGATCCGGCCCCGCAGTGTCTCGAGTGCAGCGACTGTGGCGAGTGCAAGAACGCGAAGAATCTTGCAGGATGCAGGGAGAATCTGGTGTCGTTTTGCGCCTCCGTGTTGCGGGATCACACCCAAGTGTGTGAGCTGATCGGGAGGGACCTCGTGAGGTGTCTCCATGAACTGGTGCTCGTGCAGGAGTTCCATGAACTGTGGAAGGACTCGATGCTGGGCCGTGCGGCGGAGATCTGCCGCATTGGCATGCCGGGTTGGTGCACCGCGATGGCCGTCTCACCGGAGATGGAGACGCAGCTGCTGTTCATGATGAACAATGTGAGGTGGGGGAATCAGAAGAGGTACCAGCTGTGGTTTGCGAGGAAGCATTTGATGGTGCCTGGAGGGGAGGAGAGGATACCCGACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGTGTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTGCAGGCGAATGCAAAGGTTGCGCTGTTCTATGACTGGTTGTTTTTCGACGAGGGTAAGGGCAATCTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACTGATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGGAGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGTATTGGTTTCTCACCTGAAGGATGGAAATGGAATACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK107313             [                                                                                                                                                                                                                                                                                                                    GGATCACACCCAAGTGTGTGAGCTGATCGGGAGGGACCTCGTGAGGTGTCTCCATGAACTGGTGCTCGTGCAGGAGTTCCATGAACTGTGGAAGGACTCGATGCTGGGCCGTGCGGCGGAGATCTGCCGCATTGGCATGCCGGGTTGGTGCACCGCGATGGCCGTCTCACCGGAGATGGAGACGCAGCTGCTGTTCATGATGAACAATGTGAGGTGGGGGAATCAGAAGAGGTACCAGCTGTGGTTTGCGAGGAAGCATTTGATGGTGCCTGGAGGGGAGGAGAGGATACCCGACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGTGTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTGCAGGCGAATGCAAAGGTTGCGCTGTTCTATGACTGGTTGTTTTTCGACGAGGGTAAGGGCAATCTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACTGATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGGAGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTGAAGGATGGAAATGGAATACATTTAACT GGACACAATATGTGCTTCATGCCATGTATTT ACCT TTGTTTT AAATATAACAAATTCATGTACAGCAGAAAACTAGGTCTTCATACAAATTTACAATCT GCCTGAACTGATTGAAGAAACCTCAATATGAGCTTTT GGATGCTACAAGCCTAAGACAAAAATA TACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACTGCATCCTTGTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAGCCA CAGGTGTATGTGTGGATGAATTTCTCCTGAGTTATAGGAGTTCATCCGATTTAAGTAGGCCACAATTATGCACTTGTAAATATTTT GTAACTATCCCAGCTTTT GTTATTCAATAGTAAAATCT                       ]
[+] EMBL CA767541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGATGGTGCCTGGAGGGGAGGAGAGGATACCCGACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGTGTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTGCAGGCGAATGCAAAGGTTGCGCTGTTCTATAACTGGTTGTTTTTCGACGAGGGTAAGGGCAATGTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACTGATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGGAGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGGACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAAAGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM039062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATAATG NCTGCCCTTGCCATT GTTTCTCACCTGAAGGATGGAAATGGAATACATTNAACTGGGACACAATANGTGCTTCATGCCATGTATTTGACCTGTTGTTTTGAAATANAACAATGTCATGTACAGCAGAAAACTAGGTCTTCATACAAATTTACATGCTGGCCTGAACTGATTGAAGAAACCTCATGATGAGCTTTTGGGATGCTACAAGCCTAAGAC ANAATANGACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACTGCATCCTTGTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAGCCACCAGGTGTATGTGTGGATGAATTTCTCCTGAGTTATAGGAGTTCATCCGATTTAAGTAGGCCACAATTATGCACTTGTAAATATTTTGGNAACTATCCCAGCTTTTGGTTATTCAATAGTAAAATCTCTTTCATGGTAGAAAAAAAAAAA]


>consensus_9160#0 GCCTCCGAGCTCGCCCGCGCGGCGGCGCCGGGGTTCGCGCCATTGCTCGTCTCGCTCCTC CGCCGCCTCCCCTTCCCCGGCGACGCCCGCCTGCTCGATATCTTCCACGAGCACGCCTCC TTCCTCGCCGACGAAGAGCCCCAGCTCCTCGCCTCCGCCGTCTTCGCCTTCCTCCGCCTC CTCGCCAAGAACCGCCTCGATCCGGCCCCGCAGTGTCTCGAGTGCAGCGACTGTGGCGAG TGCAAGAACGCGAAGAATCTTGCAGGATGCAGGGAGAATCTGGTGTCGTTTTGCGCCTCC GTGTTGCGGGATCACACCCAAGTGTGTGAGCTGATCGGGAGGGACCTCGTGAGGTGTCTC CATGAACTGGTGCTCGTGCAGGAGTTCCATGAACTGTGGAAGGACTCGATGCTGGGCCGT GCGGCGGAGATCTGCCGCATTGGCATGCCGGGTTGGTGCACCGCGATGGCCGTCTCACCG GAGATGGAGACGCAGCTGCTGTTCATGATGAACAATGTGAGGTGGGGGAATCAGAAGAGG TACCAGCTGTGGTTTGCGAGGAAGCATTTGATGGTGCCTGGAGGGGAGGAGAGGATACCC GACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGT GTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTG CAGGCGAATGCAAAGGTTGCGCTGTTCTATGACTGGTTGTTTTTCGACGAGGGTAAGGGC AATCTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACT GATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGG AGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGA GTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAG AAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAA CCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACC CTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATT TCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCAC GTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTAC CAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCG CATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACC TTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTC TCACCTGAAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATG TATTTACCTTTGTTTTAAATATAACAAATTCATGTACAGCAGAAAACTAGGTCTTCATAC AAATTTACAATCTGCCTGAACTGATTGAAGAAACCTCAATATGAGCTTTTGGATGCTACA AGCCTAAGACAAAAATATACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACT GCATCCTTGTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAG CCACAGGTGTATGTGTGGATGAATTTCTCCTGAGTTATAGGAGTTCATCCGATTTAAGTA GGCCACAATTATGCACTTGTAAATATTTTGTAACTATCCCAGCTTTTGTTATTCAATAGT AAAATCTCTTTCATGGTAGAAAAAAAAAAA



consensusID : consensus_9160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [GACAAGGGGGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTTTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTTTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAAAAGAGTAGCATGTTAGGAATGGACTCAACACCCCTTGCCCGCAATCTCTCCTTTTGGGATTTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCCTGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTTATTTGAGCAAAGCTACGCATACTAAATTTTTGCTGACATGTTACATTGCATCCCAGACCCATTTGTTTGCAGAGTTACAGTTTAACCCATCCAGTGAACTGCCCAACCTTGTTAGCATACTTATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTTTCCCCTGAAGGATGGAAATGGAATACCTTTAACTGGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761163             [GACAAGGGGGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTATCTTTTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTTTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAAAAGAGTAGCATGTTAGGAATGGACTCAACACCCCTTGCCCGCAATCTCTCCTTTTGGGATTTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCCTGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTTATTTGAGCAAAGCTACGCATACTAAATTTTTGCTGACATGTTACATTGCATCCCAGACCCATTTGTTTGCAGAGTTACAGTTTAACCCATCCAGTGAACTGCCCAACCTTGTTAGCATACTTATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTTTCCCCTGAAGGATGGAAATGGAATACCTTTAACTGGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9160#1 GACAAGGGGGGAACGCATTTGCGGTACTGGTGAAGAAAGGAGTGGTCCCTTCCTTGGATA TATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAGAAACTTGTGGCATTTTTAT CTTTTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTTTA AAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAAAAGAG TAGCATGTTAGGAATGGACTCAACACCCCTTGCCCGCAATCTCTCCTTTTGGGATTTTCA GGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCCTG CTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTTATTTGAG CAAAGCTACGCATACTAAATTTTTGCTGACATGTTACATTGCATCCCAGACCCATTTGTT TGCAGAGTTACAGTTTAACCCATCCAGTGAACTGCCCAACCTTGTTAGCATACTTATATT CATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTTTCCCCTGAAGGATGGAAAT GGAATACCTTTAACTGGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9160#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [TGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTGAAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATGTATTTACCTTTGTTTTAAATATAACAAATTCATGTAAAAAAAAAAAAAAAAAACTCGAACTAGTCCTCGTGCCGA]

[+] EMBL CF324804             [TGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTGAAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATGTATTTACCTTTGTTTTAAATATAACAAATTCATGTAAAAAAAAAAAAAAAAAACTCGAACTAGTCCTCGTGCCGA]


>consensus_9160#2 TGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAACCCATTG ATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACCCTTTTAC TGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATTTCTCCTT TTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCACGTGTAGA GGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTACCAACAGC TGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCGCATCACA GACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACCTTGTTAG CATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTCTCACCTG AAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATGTATTTAC CTTTGTTTTAAATATAACAAATTCATGTAAAAAAAAAAAAAAAAAACTCGAACTAGTCCT CGTGCCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9160#0      GCCTCCGAGCTCGCCCGCGCGGCGGCGCCGGGGTTCGCGCCATTGCTCGTCTCGCTCCTC 60
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      CGCCGCCTCCCCTTCCCCGGCGACGCCCGCCTGCTCGATATCTTCCACGAGCACGCCTCC 120
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      TTCCTCGCCGACGAAGAGCCCCAGCTCCTCGCCTCCGCCGTCTTCGCCTTCCTCCGCCTC 180
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      CTCGCCAAGAACCGCCTCGATCCGGCCCCGCAGTGTCTCGAGTGCAGCGACTGTGGCGAG 240
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      TGCAAGAACGCGAAGAATCTTGCAGGATGCAGGGAGAATCTGGTGTCGTTTTGCGCCTCC 300
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GTGTTGCGGGATCACACCCAAGTGTGTGAGCTGATCGGGAGGGACCTCGTGAGGTGTCTC 360
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      CATGAACTGGTGCTCGTGCAGGAGTTCCATGAACTGTGGAAGGACTCGATGCTGGGCCGT 420
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GCGGCGGAGATCTGCCGCATTGGCATGCCGGGTTGGTGCACCGCGATGGCCGTCTCACCG 480
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GAGATGGAGACGCAGCTGCTGTTCATGATGAACAATGTGAGGTGGGGGAATCAGAAGAGG 540
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      TACCAGCTGTGGTTTGCGAGGAAGCATTTGATGGTGCCTGGAGGGGAGGAGAGGATACCC 600
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GACATTGTCCGGTTCATCTGTTGCGGGTATCACCCAACAAATAAGGTTATGCAGTCTGGT 660
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GTCATTGCCCGATGGGCGGTCATAGGTTGGCTGCTGACAAGCTGCAATAAGAGCTATGTG 720
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      CAGGCGAATGCAAAGGTTGCGCTGTTCTATGACTGGTTGTTTTTCGACGAGGGTAAGGGC 780
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      AATCTCATGAATATTGAGCCTGCAATGCTCCTGATGGTAAACTCAGTGTCTCAGTATACT 840
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GATATCACAAACATGCTACTTGAGTTCTTGTTTCTTCTTGTCGAGAACTATGACGTGCGG 900
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      AGGAAGGAGGCGATTGCTGAGTGTGTAAGGAACGCATTTGCGGTACTGGTGAAGAAAGGA 960
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      -------------------GACAAGGGGGGAACGCATTTGCGGTACTGGTGAAGAAAGGA 41
                                                                                  

consensus_9160#0      GTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAG 1020
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      GTGGTCCCTTCCTTGGATATATTGACATGCTGTGAGAAGCTTTCACCGATGCTGAGGCAG 101
                                                                                  

consensus_9160#0      AAACTTGTGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAA 1080
consensus_9160#2      -------TGGCATTTTTATCTTCTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAA 53
consensus_9160#1      AAACTTGTGGCATTTTTATCTTTTGCTAGTCCTGAAGAAACCGAAAAAACTTGTGGGCAA 161
                             *************** *************************************

consensus_9160#0      CCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACC 1140
consensus_9160#2      CCCATTGATGAGGCTTCTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACC 113
consensus_9160#1      CCCATTGATGAGGCTTTTAAAGCAATGGATTTGAACAACAGAGTTTGCTCAAACTAGACC 221
                      **************** *******************************************

consensus_9160#0      CTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATT 1200
consensus_9160#2      CTTTTACTGTTCAACAGAGTAGCATGTTAGGAATGAACTCAACACCACTTGCCCGCAATT 173
consensus_9160#1      CTTTTACTGTTCAAAAGAGTAGCATGTTAGGAATGGACTCAACACCCCTTGCCCGCAATC 281
                      ************** ******************** ********** ************ 

consensus_9160#0      TCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCAC 1260
consensus_9160#2      TCTCCTTTTGGGATCTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCAC 233
consensus_9160#1      TCTCCTTTTGGGATTTTCAGGAAGACCTGGAAAGAGGACTTGAAGATTGTATGGCATCAC 341
                      ************** *********************************************

consensus_9160#0      GTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTAC 1320
consensus_9160#2      GTGTAGAGGTGAACGCATGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTAC 293
consensus_9160#1      GTGTAGAGGTGAACGCCTGCTTTGAAGGTGGAAGAATACGGATTGTAGAATGTGGCTTAC 401
                      **************** *******************************************

consensus_9160#0      CAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCG 1380
consensus_9160#2      CAACAGCTGGTCATATGAGCAGAGCTACGCATACTAAATCTCTGCTGACATGTTACATCG 353
consensus_9160#1      CAACAGCTGGTTATTTGAGCAAAGCTACGCATACTAAATTTTTGCTGACATGTTACATTG 461
                      *********** ** ****** ***************** * **************** *

consensus_9160#0      CATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACC 1440
consensus_9160#2      CATCACAGACACATTTGTTTACAGAGTTACAGTCTAACCCATCCAGTGAACTACACAACC 413
consensus_9160#1      CATCCCAGACCCATTTGTTTGCAGAGTTACAGTTTAACCCATCCAGTGAACTGCCCAACC 521
                      **** ***** ********* ************ ****************** * *****

consensus_9160#0      TTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTC 1500
consensus_9160#2      TTGTTAGCATACTCATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTC 473
consensus_9160#1      TTGTTAGCATACTTATATTCATGGTTATGGAGATAATGAACTGGCCTTGGCATTGGTTTT 581
                      ************* ********************************************* 

consensus_9160#0      TCACCTGAAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATG 1560
consensus_9160#2      TCACCTGAAGGATGGAAATGGAATACATTTAACTGGACACAATATGTGCTTCATGCCATG 533
consensus_9160#1      TCCCCTGAAGGATGGAAATGGAATACCTTTAACTGGGCCAAAAAAAAAAAAAAAAAAAAA 641
                      ** *********************** ********* *  ** *        *    *  

consensus_9160#0      TATTTACCTTTGTTTTAAATATAACAAATTCATGTACAGCAGAAAACTAGGTCTTCATAC 1620
consensus_9160#2      TATTTACCTTTGTTTTAAATATAACAAATTCATGTAAAAAAAAAAAAAAAAAACTCGAAC 593
consensus_9160#1      AAAAAAAAA--------------------------------------------------- 650
                       *   *                                                      

consensus_9160#0      AAATTTACAATCTGCCTGAACTGATTGAAGAAACCTCAATATGAGCTTTTGGATGCTACA 1680
consensus_9160#2      TAGTCCTCGTGCCGA--------------------------------------------- 608
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      AGCCTAAGACAAAAATATACAGATCTTATGTTCAAATGTGCTGCAGAGACAACATGCACT 1740
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GCATCCTTGTGATGCTGAACGTTTTTGTGTGGGCGTGATATATTTTCTTCAGAAACATAG 1800
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      CCACAGGTGTATGTGTGGATGAATTTCTCCTGAGTTATAGGAGTTCATCCGATTTAAGTA 1860
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      GGCCACAATTATGCACTTGTAAATATTTTGTAACTATCCCAGCTTTTGTTATTCAATAGT 1920
consensus_9160#2      ------------------------------------------------------------
consensus_9160#1      ------------------------------------------------------------
                                                                                  

consensus_9160#0      AAAATCTCTTTCATGGTAGAAAAAAAAAAA 1950
consensus_9160#2      ------------------------------
consensus_9160#1      ------------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)