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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1281 fasta sequence
[CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAATCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGAGCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAGGGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAG-AAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTCCTTCGGCTAC-AGATAGAGATTTTTGAGGCAAGCAAAGATGAC-AACAGGGAGGC-ATCACCAGAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTGGCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGGAGTTGTGCTCCAAAAAAAAAA]
[-] EMBL AK111081 [CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAATCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGAGCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAGGGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG ]
[+] EMBL AK108941 [ TCCGTTCGGTCGCCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAG AAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTCCTTCGGCTAC AGATAGAGATTTTTGAGGCAAGCAAAGATGAC AACAGGGAGGC ATCACCAGAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTGGCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGGA ]
[+] EMBL CF324967 [ TGATGTTCAAAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTACCGAGTCAGATGAAG AAAGGTCACCCATTGACA ]
[+] EMBL BM420716 [ GCGATTCTGATGAAGAAAAGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGCCTGACCAA GCGCCCTTCCTTC GCTACAAGATAGAGATTTTTGAGCCAAGCAAAGATGACAAACAGGGAGGCAATCACCAGAATGCTCGATTT CCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGTGGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCATATTGTCG AC AACATACAGTCACGATCCTGACTACCTTAGTTCTGCATT GCAGTTT GCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTGCATCCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTCCCACTGGAGTTGTGCTCCAAAAAAAAAA]
consensusID : consensus_9163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG]
[+] EMBL CF326738 [CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCGCCACCCCGCCATGACGAGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGATCCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGCGGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAGCACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTATCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG]
consensusID : consensus_9163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[ACGAGACAAGGGGGGATCGTGTCTTATCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT]
[+] EMBL CA764080 [ACGAGACAAGGGGGGATCGTGTCTTATCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGGCTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTTCTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTGGATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCATATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 CTAATATTTTTTTTACTAGCACTTGCAATATGTGCTGATAAAAAAAATAGAACGTGTCAA 60
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 TCATAGTATTAGCATACTGTACATGGCTGCCTGTCATTTTGACGTAGGTCCAATACAGGA 120
consensus_9163#1 ----------------------------CGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAG 32
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GCATAAAATAGCAAGAAAACAATTAAATTAAGCGTGAAAAAGGAAGGGACGAAGAAAAAG 180
consensus_9163#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-------------AGAGAGAGA 79
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GGGAGGAAGAAGAGCAAAGCGGAGACGACCAACCAAATCCTTGTCCCGTCCGTTCGGTCG 240
consensus_9163#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-GCCGCCACCCCGCCATGACG 138
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 CCGCGTCGAGGAGGCAGGGAGCTCGCGGCCTCGCACCACCGCCGCCACCCCGCCATGACG 300
consensus_9163#1 AGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGAT 198
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 AGCGCCTCCGAGCTCTTCACCGCCCGCCGCGCCCGCGCCGCCCGCCTCTCCGACCCCGAT 360
consensus_9163#1 CCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGC 258
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 CCGGACCCGGATCCGCCTGCGGACGCGCTCCATGACCCGCACGGCCTCGCCGATCGCCGC 420
consensus_9163#1 GGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG 318
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GGCCGGCGCCGGGGCTGCCGCCCGCGCCGCCAGCTCGACGCCGCCGGGGACGTCCGCCAG 480
consensus_9163#1 CACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTA 378
consensus_9163#2 ----------------------------------ACGAGACAAGGGGGGATCGTGTCTTA 26
consensus_9163#0 CACCTGCACACCGGGGCCCCGCCCTCCCGCCGCCGCGCTTCGTACACCGATCGTGTCTTA 540
** * ************
consensus_9163#1 TCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 438
consensus_9163#2 TCGTACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 86
consensus_9163#0 TCATACATAGACAATAGCAACATTGGGGACTCTGCAACTAGGAGGAACCGACTGGATAGG 600
** *********************************************************
consensus_9163#1 CTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 498
consensus_9163#2 CTGATGTTCAGAACAAATGAGCAGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 146
consensus_9163#0 CTGATGTTCAGAACAAATGAGCGGCTTCCTGGTGCTGTACTGCAAGCACAAGCACGTGTT 660
********************** *************************************
consensus_9163#1 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 558
consensus_9163#2 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 206
consensus_9163#0 CTAGAGAGACTGAGAGGCATTTCTATTGGTTCATCTGTGTCAAGGCCATCTATCACATTG 720
************************************************************
consensus_9163#1 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCA 618
consensus_9163#2 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTNCA 266
consensus_9163#0 GATGAATTTTCAGCTACTGATGTGTTTAGAATCATTGACTTCGGGAACAGGGATGCTCCA 780
********************************************************* **
consensus_9163#1 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAG------------------- 659
consensus_9163#2 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATT----------------------- 303
consensus_9163#0 TATGAAGCAAATAGGTCCAGCTCATCATTGGCCCATCCAAGTAGCGAGTCAGATGAAGAA 840
************************************
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 AGGTCACCCATTGACACCAGTTCCTTAAAAAGATCACGTGGGCTGAGCAAGGCGGCCTTC 900
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 CTTCGGCTACAGATAGAGATTTTTGAGGCAAGCAAAGATGACAACAGGGAGGCATCACCA 960
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GAATGCTCGATTTGCCTTGATGGATTCTATGACGGAGATGAGCTCATAAAGCTACGTTGT 1020
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GGGCACAGGTTTCACTCGAATTGCCTGGAGCCATGGGTACGGAAATGTGCTGATTGCCCA 1080
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 TATTGTCGAACAAACATACAGTCACGATCCTGACTACCTTAGTTCTGCATTGGCAGTTTG 1140
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 GCACTCTCATTAGAACTGTAATTAACAGTAAGATGTATTGTTGTAATTCAGTGTTATGTG 1200
consensus_9163#1 ------------------------------------------------------------
consensus_9163#2 ------------------------------------------------------------
consensus_9163#0 CATGCCTGTTACCCGGAGTTGGTATGACATCACTCTATTGAATTTCATTGTTGCCACTGG 1260
consensus_9163#1 ---------------------
consensus_9163#2 ---------------------
consensus_9163#0 AGTTGTGCTCCAAAAAAAAAA 1281
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||