These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1316 fasta sequence [AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT-CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATCATATGTTTTCTAACAAGTAAATTTGTTTTCTGCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT] [+] EMBL CB665165 [AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTTCCCAT AAATCTACTTNCATTGCAAAA TGACACTAAATCATATGTTTTCTAACAAGTAAAT ] [+] EMBL CB654724 [ AATCTCGATTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTACTCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTAACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATC ] [-] EMBL CB665166 [ CAAACAAGGATTTATCACCTGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTAGCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGGTTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGAGATTCTATTTTGCATAACATTTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCTTATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAGATCAAACGTTCCAGACCACTT CCATAAAATCTACTTCAATTGCAAAATTGACACTAAATCATATGTTTTCTAACAAGTAAATTTGTTTTCTGCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT] consensusID : consensus_9168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 815 fasta sequence [TACTTGCCTTTGCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTTTTTCTTCTGGGATCAACCTG] [+] EMBL AK066722 [TACTTGCCTTTGCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACT ] [+] EMBL CB662531 [ GCCTTCCAAAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTANGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAGGAAAACTC ACTATTTTTTTTCTTCTGGGATCAACCT ] [-] EMBL CB662532 [ AGAGAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCATCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATCCCAATCATTCACATCGATATCTGATGCTACACGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTTTTTCTTCTGGGATCAACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9168#0 AAATCTGGAGTCCAAAAATACACAGGAGATAAGCAGCCATTTGCTCCTGGAAGAATGAGA 60 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 GAAGCTTGCGCGCCGGTGCCTCCTGGGGCTCATGAGGAGGCCTGCATAGAGCAAAGTGAT 120 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 GATCGATCTGAAGATGGTTCCTTCTCGGGTTCGTCCATCGGGTCGTCGTGCTCATCGGCA 180 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TCGGATCTGAGTGATGATGGGAGTTCTTACCGTCCTGGTGATTATCTTGAGCCGTCATCG 240 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAAGGGCCGCTCTGTGAC 300 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TTGTCCTCACTGATAGCCCAGCTTCCTATCAGGTGCTTTGCTCCTCCCCTGCAGAAGTAC 360 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TCGTAGTTAGAGAAAATTGCACCATGCTTATATGAATTTCAAGTTTCGGTAGATGCTTTA 420 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 ACGGTGTGAAATTTGTTGCTTGTGTTCCCAATTTGTGCCAGCAAACAAGGATTTATCACC 480 consensus_9168#1 --------------------------------------------------------TACT 4 ** consensus_9168#0 TGACTACTGTAAACTATATTAGTTGAATGAACACATTTGCAAATGATATAGTAGCTACTA 540 consensus_9168#1 TGCCT-TTGCCTTCCAAAATC-TGGAGTCCAAAAATACACAGGAGATA-AGCAGCCATTT 61 ** ** ** * * * * * ** * * * ** ** **** ** *** * * consensus_9168#0 GCTAGTTCATTTTTTCAACTAGACAATGATTTTCTCCGAACAGCTTTTCAGATTTGTTGG 600 consensus_9168#1 GCTCCTGGA-----AGAATGAGAGAAGCTTGCGCGCCGGT--GCCTCCTGGGGCTCATGA 114 *** * * ** *** ** * * *** ** * * * ** consensus_9168#0 TTGAATTTTAATGATATTGCCTACCTGCTAAATTGTAGA-GATTCTATTTTGCATAACAT 659 consensus_9168#1 GGAGGCCTGCATAGAGCAAAGTGATGATCGATCTGAAGATGGTTCCTTCTCGGGTT-CGT 173 * ** * * ** *** * *** * * * * * * consensus_9168#0 TTATGACAAGCAAAATGTTCAAATTGGGCTTGATCTATGTATGTATGCAGCATCAGGTCT 719 consensus_9168#1 CCATCG-GGTCGTCGTGCTCAT-CGGCATCGGATCTGAGTGATGATGGG-----AGTTCT 226 ** * ** *** * ***** ** *** ** *** consensus_9168#0 TATTTGAACATTTTGTTCAAAAGACGAAATGACTGGAGAAAATAATGTCGATATTAAAAG 779 consensus_9168#1 TAC-----CGTCCTGGT---------GATTATCTTGAGCCGTCATCGTCGTCGTCA---- 268 ** * * ** * * * ** *** * **** * * consensus_9168#0 ATCAAACGTTCCAGACCACTTCCATAAAATCTACTTCAATTGCAAAATTGACACTAAATC 839 consensus_9168#1 --TCAGCATCTTCGAGCACAT--------TGCAGCTGGATT-CTGAAGGGCCGCTCTGTG 317 * * * ** *** * * * * *** * ** * * ** * consensus_9168#0 ATATGTTTTCTAACAAGTAAATTTGTTTTCTG-CAGGAGAGGGCTGTCCAACTATTACCA 898 consensus_9168#1 ACTTGTCCTC--ACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCA 375 * *** ** ** ** * ** ** *************************** consensus_9168#0 AGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAA 958 consensus_9168#1 AGGAAAATCCCAATCATTCACATCGATATCTGATGCTACATGTGTTCAGGACCTTGCAAA 435 ************************************************************ consensus_9168#0 GAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACAT 1018 consensus_9168#1 GAAAATTACCTACAATAAGAGGATGAAGGCGTGCAAAAGCTATGCAGCAGGACTAGACAT 495 ************************************************************ consensus_9168#0 GAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTC 1078 consensus_9168#1 GAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCGAAGAGGCCCTC 555 ************************************************************ consensus_9168#0 GAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAG 1138 consensus_9168#1 GAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAG 615 ************************************************************ consensus_9168#0 TGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACA 1198 consensus_9168#1 TGCTAAACCACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACA 675 ************************************************************ consensus_9168#0 AAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTC 1258 consensus_9168#1 AAAAATATGACCCTGGAAAGTGGAAACAAACAAGTACTAGGGTTTCAGGTATCCAGTTTC 735 ************************************************************ consensus_9168#0 AGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTT-- 1316 consensus_9168#1 AGCTAACATGTTGTGCTGCGCTTGTACTGCTCCTTTTCACAAGGAAACTCAACTATTTTT 795 ********************************************************** consensus_9168#0 -------------------- consensus_9168#1 TTTCTTCTGGGATCAACCTG 815 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||