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Oryza sativa
cluster # 9170 cluster # 9170       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9170#0 length = 1562 sequences # 6  

consensusID : consensus_9170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1562
fasta sequence
                              [AATGGCAAAATGATGCAGCAGATTGCTTGGGAGGCTTCTCCAGCTTTAGAGTCTTCTGAAAGATATGACCTATTGGATAATCATACCATGGATGCTTTAGCTGGAGGGATTGGCAATGCTACCTTTGGCAAGAGTAAGAAAGGGAGATGTACTGATCTGTCATCATCATTAGGTAGGGAAAGCACTTCAGAATATGTTTCACTTGAGGATCTTGCACCATTAGCCATGGAAAAGATTGAAGCCCTTTCCATTGAGGGTCTGAGGATACAATCTGGCATGTCAGAAGAGGATGCACCCTCCAATATCAGTGCCCAGCCTATTGGGGAATTTTCCTCTCTGCAAGGAAAATGTGCAGGGAATACCCTCTCCCTTGGTTTAGAAGGAACCGCAGGGTTACAACTCCTGGATGTCAAACAAAGTGGTGGTGATGTCGATGGACTAAT-GGGGTTGTCAATCACTCTTGATGAGTGGATGAGGCTTGATTCTGGCATAGTAGATGAAGATGAGCAGTTCACTGACCGGACGTCAAAGATACTTGCTGCTCACCATGCCAAATCAATGGAATTAGTTGCTGAAAACCAGAATGTGGACAAAAAGAACAGGAGGTCTGGTAGAAGAT-GGGGTTTGCTAGGGAACAACTTCACTGTTGCTCTCATGGTTCAACTGCGTGACCCACTACGTAACTATGAGCCAGTTGGCACGCCGATGCTTGCTTTAATTCAAGTGGAAAGGGTCTTCGTTCCCCCAAAGCCTAAGATATACAGTACTGTCACAGATAAAGGTAACAGTGAGCATGATGATGAGGAGCCCAAGACTGAAGAGGTACTAGAAAAAGCTTTGGTCAAGGAAGAAAAGATTGAGGAAGAAGAAGATTCTGTTCCACAATTTAAAGTCGCAGAAGTGCATGTAGCTGGTTTCAAGAGCGAGCCTGAGAAGACAAAATCATGGGGTAATCAAACACAGCAACAATCGGGATCAAGATGGCTGCTTGCAGCTGGCATGGGTAAGGGCAATAAGCATCCCCTGATGAAATCCAAAGCTATTGCGAAG-CCAACTAAAGAGGCAGCTGGTCAGTCA-GAAGACA-CCCTTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAATTAGCTGGACCTAAAAGG-AACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATGAATCTGTTCAGGGAAGAGTCTATTTATCTGGAACCTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGTAAATGTAGTTCCTTTTTCTTGATACACCTTGAACCATCCAGGTACATGCACATGCTTCCGATCGGTTGTGCTCCTTTTCTCCTTGTACTTGGCTGTACTGAGAAACTGGTATTTCTCCTTTTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGCGCAATAGCAA---TACAGCCTTCTCATGTATGTAGTGGTTCTAGCATTCATTTGGCCAGTCTTTTAACGGATTTTATACCCAT]

[+] EMBL AK060399             [AATGGCAAAATGATGCAGCAGATTGCTTGGGAGGCTTCTCCAGCTTTAGAGTCTTCTGAAAGATATGACCTATTGGATAATCATACCATGGATGCTTTAGCTGGAGGGATTGGCAATGCTACCTTTGGCAAGAGTAAGAAAGGGAGATGTACTGATCTGTCATCATCATTAGGTAGGGAAAGCACTTCAGAATATGTTTCACTTGAGGATCTTGCACCATTAGCCATGGAAAAGATTGAAGCCCTTTCCATTGAGGGTCTGAGGATACAATCTGGCATGTCAGAAGAGGATGCACCCTCCAATATCAGTGCCCAGCCTATTGGGGAATTTTCCTCTCTGCAAGGAAAATGTGCAGGGAATACCCTCTCCCTTGGTTTAGAAGGAACCGCAGGGTTACAACTCCTGGATGTCAAACAAAGTGGTGGTGATGTCGATGGACTAAT GGGGTTGTCAATCACTCTTGATGAGTGGATGAGGCTTGATTCTGGCATAGTAGATGAAGATGAGCAGTTCACTGACCGGACGTCAAAGATACTTGCTGCTCACCATGCCAAATCAATGGAATTAGTTGCTGAAAACCAGAATGTGGACAAAAAGAACAGGAGGTCTGGTAGAAGAT GGGGTTTGCTAGGGAACAACTTCACTGTTGCTCTCATGGTTCAACTGCGTGACCCACTACGTAACTATGAGCCAGTTGGCACGCCGATGCTTGCTTTAATTCAAGTGGAAAGGGTCTTCGTTCCCCCAAAGCCTAAGATATACAGTACTGTCACAGATAAAGGTAACAGTGAGCATGATGATGAGGAGCCCAAGACTGAAGAGGTACTAGAAAAAGCTTTGGTCAAGGAAGAAAAGATTGAGGAAGAAGAAGATTCTGTTCCACAATTTAAAGTCGCAGAAGTGCATGTAGCTGGTTTCAAGAGCGAGCCTGAGAAGACAAAATCATGGGGTAATCAAACACAGCAACAATCGGGATCAAGATGGCTGCTTGCAGCTGGCATGGGTAAGGGCAATAAGCATCCCCTGATGAAATCCAAAGCTATTGCGAAG CCAACTAAAGAGGCAGCTGGTCAGTCA GAAGACA CCCTTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAATTAGCTGGACCTAAAAGG AACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATGAATCTGTTCAGGGAAGAGTCTATTTATCTGGAACTTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGTAAATGTAGTTCCTTTTTCTTGATACACCTTGAACCATCCAGGTACATGCACATGCTTCCGATCGGTTGTGCTCCTTTTCTCCTTGTACTTGGCTGTACTGAGAAACTGGTATTTCTCCTTTTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGCGCAATAGCAA   TACAGCCTTCTCATGTATGTAGTGGTTCTAGCAT                                    ]
[+] EMBL CF325600             [                                                                                       ATGGATGCTTTAGCTGGAGGGATTGGCAATGCTACCTTTGGCAAGAGTAAGAAAGGGAGATGTACTGATCTGTCATCATCATTAGGTAGGGAAAGCACTTCAGAATATGTTTCACTTGAGGATCTTGCACCATTAGCCATGGAAAAGATTGAAGCCCTTTCCATTGAGGGTCTGAGGATACAATCTGGCATGTCAGAAGAGGATGCACCCTCCAATATCAGTGCCCAGCCTATTGGGGAATTTTCCTCTCTGCAAGGAAAATGTGCAGGGAATACCCTCTCCCTTGGTTTAGAAGGAACCGCAGGGTTACAACTCCTGGATGTCAAACAAAGTGGTGGTGATGTCGATGGACTAATGGGGGTTGTCAATCACTCTTGATGAGTGGATGAGGCTTGATTCTGGCATAGTAGATGAAGATGAGCAGTTCACTGACCGGACGTCAAAGATACTTGCTGCTCACCATGCCAAATCAATGGAATTAGTTGCTGAAAACCAGAATGTGGACAAAAAGAACAGGAGGTCTGGTAGAAGATGGGGGTTTGCTAGGGAACAACTTCACTGTTGCTCTCATGGTTCAACTGCGTGACCCACTACGTAACTATGAGCCAGTTGGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF306320             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAG ACAGGAGGTCTGGTAGAAGAT GGGGTTTGCTAGGGAACAACTTCACTGTTGCTCTCATGGTTCAACTGCGTGACCCACTACGTAACTATGAGCCAGTTGGCACGCCGATGCTTGCTTTAATTCAAGTGGAAAGGGTCTTCGTTCCCCCAAAGCCTAAGATATACAGTACTGTCACAGATAAAGGTAACAGTGAGCATGATGATGAGGAGCCCAAGACTGAAGAGGTACTAGAAAAAGCTTTGGTCAAGGAAGAAAAGATTGAGGAAGAAGAAGATTCTGTTCCACAATTTAAAGTCGCAGAAGTGCATGTAGCTGGTTTCAAGAGCGAGCCTGAGAAGACAAAATCATGGGGTAATCAAACACAGCAACAATCGGGATCAAGATGGCTGCTTGCAGCTGGCATGGGTAAGGGCAATAAGCATCCCCTGATGAAATCCAAAGCTATTGCGAAG CCAACTAAAGAGGCAGCTGGTCAGTCA GAAGACA CCCTTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAATTAGCTGGACCTAAAAGG AACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGG                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BQ906695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTAATCAAACACAGCCAC ATCGGGATCAAGATGGCTGCTTGCAGCTGGCATGGGTAAGGGCAATAAGCATCCCCTGATGAAATCCAAAGCTATTGCGAAGCCCAACTANAGAGGCAGCTGGTCAGTCA GGAGACAGCCCTTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAGTTAGCTGGACCTAAAAGG AACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATGAATCTGTTCAGGGAAGAGTCTATTTATCTGGAACCTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGTAAATGTAGTTCCTTTTTCTTGATAaaaaa                                                                                                                                                                                                                        ]
[+] EMBL BI797744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGTCAGTCAGGAGGACA CCCTTTGGACCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAGTTAGCTGGACCTAAAAGGTAACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATGAATCTGTTCAGGGAAGAGTCTATTTATCTGGAACCTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGTAAATGTAGTTCCTTTTTCTTGATACACCTTGAACCATCCAGGTACATGCACATGCTTCCGATCGGTTGTGCTCCTTTTCTCCTTGTACTTGGCTGTACTGAGAAACTGGTATTTCTCCTTTTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGC C ATAGCAATACTACAGCCTTCTCATGTAaaaa                                                 ]
[+] EMBL AA752021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cgagCTTGAA CATCCAGGTACATGCACATGCTTCCGATCGGTTGTGCTCCTTTTCTCCTTGTACTTGGCTGTACTGAGAAACTGGTATTTCTCCTTTTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGCGCAATAGCAATACTACAGCCTTCTCATGTNTGTAGTGGTTCTAGCATTCATTTGGCCAGTCTTTTAACGGATTTTATACCCAT]


>consensus_9170#0 AATGGCAAAATGATGCAGCAGATTGCTTGGGAGGCTTCTCCAGCTTTAGAGTCTTCTGAA AGATATGACCTATTGGATAATCATACCATGGATGCTTTAGCTGGAGGGATTGGCAATGCT ACCTTTGGCAAGAGTAAGAAAGGGAGATGTACTGATCTGTCATCATCATTAGGTAGGGAA AGCACTTCAGAATATGTTTCACTTGAGGATCTTGCACCATTAGCCATGGAAAAGATTGAA GCCCTTTCCATTGAGGGTCTGAGGATACAATCTGGCATGTCAGAAGAGGATGCACCCTCC AATATCAGTGCCCAGCCTATTGGGGAATTTTCCTCTCTGCAAGGAAAATGTGCAGGGAAT ACCCTCTCCCTTGGTTTAGAAGGAACCGCAGGGTTACAACTCCTGGATGTCAAACAAAGT GGTGGTGATGTCGATGGACTAATGGGGTTGTCAATCACTCTTGATGAGTGGATGAGGCTT GATTCTGGCATAGTAGATGAAGATGAGCAGTTCACTGACCGGACGTCAAAGATACTTGCT GCTCACCATGCCAAATCAATGGAATTAGTTGCTGAAAACCAGAATGTGGACAAAAAGAAC AGGAGGTCTGGTAGAAGATGGGGTTTGCTAGGGAACAACTTCACTGTTGCTCTCATGGTT CAACTGCGTGACCCACTACGTAACTATGAGCCAGTTGGCACGCCGATGCTTGCTTTAATT CAAGTGGAAAGGGTCTTCGTTCCCCCAAAGCCTAAGATATACAGTACTGTCACAGATAAA GGTAACAGTGAGCATGATGATGAGGAGCCCAAGACTGAAGAGGTACTAGAAAAAGCTTTG GTCAAGGAAGAAAAGATTGAGGAAGAAGAAGATTCTGTTCCACAATTTAAAGTCGCAGAA GTGCATGTAGCTGGTTTCAAGAGCGAGCCTGAGAAGACAAAATCATGGGGTAATCAAACA CAGCAACAATCGGGATCAAGATGGCTGCTTGCAGCTGGCATGGGTAAGGGCAATAAGCAT CCCCTGATGAAATCCAAAGCTATTGCGAAGCCAACTAAAGAGGCAGCTGGTCAGTCAGAA GACACCCTTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGAATTA GCTGGACCTAAAAGGAACCCAAATATCCTCCTTCAAAAAGAAAAGCGATTTAGGTGATGG CTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATGAATCTGTTCAGGG AAGAGTCTATTTATCTGGAACCTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGT AAATGTAGTTCCTTTTTCTTGATACACCTTGAACCATCCAGGTACATGCACATGCTTCCG ATCGGTTGTGCTCCTTTTCTCCTTGTACTTGGCTGTACTGAGAAACTGGTATTTCTCCTT TTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGCGCAATAGCAATACAGCCT TCTCATGTATGTAGTGGTTCTAGCATTCATTTGGCCAGTCTTTTAACGGATTTTATACCC AT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)