These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1478 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGGGAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCA-TTTCTTTCCTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCATCTGAGACAACTTCTTAGCTAGATCCTCTAATTCAACCATATCCCAAGCTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGTACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCATGACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATGTCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAGCTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCATGATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCACACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACGCTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGCGAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGTCAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG] [-] EMBL AU085781 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGGGAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGNCAACAACANCAACAAGGTGNTNGAGGGGGAANANCTAGACC ] [+] EMBL CB672223 [ GGATATGCTATGCTTTTACTTTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCA TTTCTTTCCTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCATCTGAGACAACTTCTTAGCTAGATCCTCTAATTCAACCATATCCCAAGCTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACG ] [+] EMBL CF325700 [ GATATGCTATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAATTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACTCCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTCATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAAGATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGGTCCTATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACAGAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTCATCCATTTCATTTTCTT ] [-] EMBL CB672222 [ CTTCTACTTGGGAGTGGGAATGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACAGATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGTACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCATGACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATGTCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAGCTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCATGATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCACACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACGCTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGCGAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGTCAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG] [-] EMBL CD645553 [ CTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAGCAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCCTGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCT ] consensusID : consensus_9171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [AAAAGAATCACCACACCCAAGGGNTGGGGGTCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACAGCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTCCNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACTTCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAANGAGC] [-] EMBL BE228530 [AAAAGAATCACCACACCCAAGGGNTGGGGGTCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACAGCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTCCNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGAATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACTTCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAANGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9171#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAGAGGG 60 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 GAAACAAGAAGAAATGCAGGAGATGTAATGTTAATGATACAACAGAATGCAGGATATGCT 120 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 ATGCTTTTATACTTTAAAACAAAGATTGGTTCCTACAAAATGGGGGGCAGAAATAAACAA 180 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 TTCATATCCAATGCCCAACCCTCTTCTTCTTCCTTTTTTCTTCCCTATACCCCTCTCACT 240 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 CCTGATGGAGGCAACAACAACAACAAGGTGCTGGAGGGGGAACAGCTAGACCAATTTTTC 300 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 ATCAACAATAAGAGTTCCAGAAACCTATTATACATGAAGAGGAGGCAAGCAGCAAAACAA 360 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 GATTAGTTCCACTAGTACAGGAGGTCAAATAAAAGAATCACCACACCCAAGGGCTGGGGG 420 consensus_9171#1 ------------------------------AAAAGAATCACCACACCCAAGGGNTGGGGG 30 *********************** ****** consensus_9171#0 TCC-TATCGACGACGACGATTTCACCGGGCACCGTCAGCAGGGTGCAACTAGTTAGCACA 479 consensus_9171#1 TCCCNATCGAGGACGAGGATTTCACCGGGCACCGTCAGCNGGGTGCAATTAGTNNGCACA 90 *** ***** ***** ********************** ******** **** ***** consensus_9171#0 GAACACAGTAGTTACCACCTATTGTGGTACACCCCTTTC-ATCCATTTCA--TTTCTTTC 536 consensus_9171#1 GCACACGGTNGNTACCACTTATTGNGGAACACCCCTTTNCATCCATTTTNATTTNTTTTC 150 * **** ** * ****** ***** ** ********** ******** ** **** consensus_9171#0 CTTTGAAGAAGAGGAGGCAGAGGCAGGCTTCCAAGCCATAGGTTAACAACTGGCGGAAGA 596 consensus_9171#1 CNTTGAAGAAGAGGAGGCAGAGGCAGGTTTCCAAGCCATAGGTTAACAANTGGCGGAAGA 210 * ************************* ********************* ********** consensus_9171#0 ATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCC-ATCTGAGACAACT 655 consensus_9171#1 ATGCGCGACGTCTTGCATCTCCAGGACAGTTTCATGGGACGAATCCCATNTGAGACAACT 270 ********************************************** ** ********** consensus_9171#0 TCTTAGCTAGATCCT-CTAATTCAACCATATCCC-AAGCTTCTA--CTTGGGAGTGGGAA 711 consensus_9171#1 TCTTAGCTAGATCNTGTTAATTCAACCATATCCCCAAGCTTCCTACCCNGGGAGTGGGAA 330 ************* * ***************** ******* * *********** consensus_9171#0 TGAGCGAGGGCAGCGACACTGCGCGCTCCCTATCTTCTTTCCACAGTATATAGCTGTACA 771 consensus_9171#1 NGAGC------------------------------------------------------- 335 **** consensus_9171#0 GATGCCACTACTCGTTTGCAGCAACTTCTGCTGCTCTCTGTCTCATCATTTCATTTACAG 831 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 CAGCCCTCCTCCTAGAATCAGATTGCTGTTGCAACCTTCGAAGATGCTCCTTGAGATCCC 891 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 TGCATCTCGGCACGTTGCATCCTGAGTCCCTGCAAGCTCGGGCATGGAGCTGGAGCATGT 951 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 ACCACATTTTCTTGCAAAGAACACACCCTCCTGAAGCACGTGTTTTGCACTGCATCCCAT 1011 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 GACGAAACAGTCCCTTGACTTTCCGGCAGTTTGGGTATTGACAACTGCCAGAGCGGCATG 1071 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 TCGAGGCATGTACCAGAAGATCAAGCATCTTCCTTAGCTGCTGGACACGCATTTGCCGAG 1131 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 CTTCCTTATTTTGGGCATCACGATCAGCAGCTGATGGATGGTTTGTTAACTTGTGAGCAT 1191 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 GATTGACTGCTCCTTTTTGGTAACAAGAATTGCATACATCAAAATCTGGACAGACTTCAC 1251 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 ACCGCCAACCCTGACCAGTTTCAATATCATGACAGCAGACGTTGCATGTAGTGACAAACG 1311 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 CTGGTGCGGTTGGATTATGTAGATGGTACAACACCATCATCGATGAGTGCTTAGCACGGC 1371 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 GAAGGGTATCGTACTGATAATGATTTCCTTGACAGAGACTAAGGAAGGCCTGCCTGGTGT 1431 consensus_9171#1 ------------------------------------------------------------ consensus_9171#0 CAAAAAATTCACTTTCCAGAATATCATCTCTATCCTTGAAGGTTTGG 1478 consensus_9171#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||