cluster # 9172

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Oryza sativa
cluster # 9172 cluster # 9172 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9172#0 length = 522 sequences # 4

consensus_9172#1 length = 438 sequences # 2

consensusID : consensus_9172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 522
fasta sequence

                              [AGCAAGGCAAGCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT-ACTGGGCTCGGCTGTC-GTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAG-CCGTCGGAGCAGCAGCAGCGCGG-GGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAANC-CCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTACTAGTCCCCTAACTATCCAGCTTCTATCTGTTGTTTTAATTGAG]

[+] EMBL CF325704             [AGCAAGGCAAGCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT ACTGGGCTCGGCTGTC GTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAG CCGTCGGAGCAGCAGCAGCGCGG GGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAAGCGCCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTACTAGTCCCCTAACTATCCAGCTTCTATCTGTTGTTTTAATTGAG]
[+] EMBL C28970               [         AGCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGT NNCNGCGGACATTGCCGCTNGT GCTAACTGGGCTCGGCTGTC GTGGCGGAGGAAGGCGGATGACCAGGCGGT                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU057292             [          GCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT ACTGGGCTCGGCTGTCGGGGGCGGAAGAAGGCGGATGACCAGGCGGTGGATGGCCGGA GCAGTCCGTCGGAGCAGCAGCAGCGCGGCGGAGGGGANCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAANC CCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACTAATTTGGNGTTTTTTTAAAAAAATTTCACACGAAC                                                            ]
[+] EMBL AU077782             [          GCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT ACTGGGCTCGGCTGTC GTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAG CCGTCGGAGCAGCAGCAGCGCGG GGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAANC NCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACTAATTTGGTGTTTTTTTA                                                                              ]




>consensus_9172#0
AGCAAGGCAAGCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGT
CGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCT
CGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTACTGGGCTCGGCTGTCGT
GGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAGCCGTCGGAGCAGCAGC
AGCGCGGGGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAANCCC
GCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGT
GATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACG
GGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTACT
AGTCCCCTAACTATCCAGCTTCTATCTGTTGTTTTAATTGAG

consensusID : consensus_9172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 438
fasta sequence

                              [GTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTNTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT-ACTGGGCTCGGCTGTCGTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCANCCGTCGGAGCAGCAGCAGCGCGGGGAGGGGAGCTCGCCGTCGCANAGGGAAGAGCGGCGGCGGCCACGCGAAGCGCCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTNGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTNCTACACGAGAGGATTTGATNTGACACGGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCNCACGAACATGTATACGATGATTACTAGTCCCCTAAAAAAAAAAAAAAAAAA]

[+] EMBL AU197769             [GTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTNTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCT ACTGGGCTCGGCTGTCGTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCANCCGTCGGAGCAGCAGCAGCGCGGGGAGGGGAGCTCGCCGTCGCANAGGGAAGAGCGGCGGCGGCCACGCGAAGCGCCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTNGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTNCTACACGAGAGGATTTGATNTGACACGGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCNCACGAACATGTATACGATGATTACTAGTCCCCTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU077783             [            CGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTAACTGGGCTCGGCTGTCGTGGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAGCCGTCGGAGCAGCAGCAGCGCGGGGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAAGCGCCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTACTAGTCCCCTAAAAAAAAAAAAAAAAAA]




>consensus_9172#1
GTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTNTCGATCCTGA
GCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTACTGGGCTCGGCTGTCGTGGCGGAGGA
AGGCGGATGACCAGGCGGTGGATGGCCGGAGGCANCCGTCGGAGCAGCAGCAGCGCGGGG
AGGGGAGCTCGCCGTCGCANAGGGAAGAGCGGCGGCGGCCACGCGAAGCGCCGCCCCTGC
CACCGCGGTTCGCCCCGGAGTTNGACGGGATCGACTGCTTCGAGACCATCGTGATGCATT
AGCCATTGCGAAATCATCATTATTNCTACACGAGAGGATTTGATNTGACACGGGGTACTA
ATTTGGTGTTTTTTTAAAAAAATTTCNCACGAACATGTATACGATGATTACTAGTCCCCT
AAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9172#0      AGCAAGGCAAGCAACCACAAATTCGAAGCAAAATTCAAGCCTACACGCCAGGTTTTTCGT 60
consensus_9172#1      ------------------------------------------------------------
                                                                                  

consensus_9172#0      CGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTCT 120
consensus_9172#1      ---------GTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGTGCTGGCATTNT 51
                               ************************************************* *

consensus_9172#0      CGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTACTGGGCTCGGCTGTCGT 180
consensus_9172#1      CGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTACTGGGCTCGGCTGTCGT 111
                      ************************************************************

consensus_9172#0      GGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAGCCGTCGGAGCAGCAGC 240
consensus_9172#1      GGCGGAGGAAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCANCCGTCGGAGCAGCAGC 171
                      ******************************************* ****************

consensus_9172#0      AGCGCGGGGAGGGGAGCTCGCCGTCGCAGAGGGAAGAGCGGCGGCGGCCACGCGAANC-C 299
consensus_9172#1      AGCGCGGGGAGGGGAGCTCGCCGTCGCANAGGGAAGAGCGGCGGCGGCCACGCGAAGCGC 231
                      **************************** *************************** * *

consensus_9172#0      CGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCTTCGAGACCATCG 359
consensus_9172#1      CGCCCCTGCCACCGCGGTTCGCCCCGGAGTTNGACGGGATCGACTGCTTCGAGACCATCG 291
                      ******************************* ****************************

consensus_9172#0      TGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACAC 419
consensus_9172#1      TGATGCATTAGCCATTGCGAAATCATCATTATTNCTACACGAGAGGATTTGATNTGACAC 351
                      ********************************* ******************* ******

consensus_9172#0      GGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTAC 479
consensus_9172#1      GGGGTACTAATTTGGTGTTTTTTTAAAAAAATTTCNCACGAACATGTATACGATGATTAC 411
                      *********************************** ************************

consensus_9172#0      TAGTCCCCTAACTATCCAGCTTCTATCTGTTGTTTTAATTGAG 522
consensus_9172#1      TAGTCCCCTAAAAAAAAAAAAAAAAAA---------------- 438
                      ***********  *   *      *