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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1118 fasta sequence
[AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA-TAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG]
[+] EMBL AK108056 [AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA TAAGTTTTG ]
[+] EMBL AU166761 [ TGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAA ]
[+] EMBL CF325858 [ gGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTTTTTTTTGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAACGAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTGAACATAGGTGGAAGAAGCATGAAGCTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGCTTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAATCA ]
[+] EMBL CA766614 [ GCATACACACAGCCAATCAGTAGAGAACC GTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCTGTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGCGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGATTAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG]
[+] EMBL AU166762 [ GCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTAATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTGGTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTGTAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATCATTGTTTGATGTATAGA TAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGACACTAATCATTTCACTCCCTTGGATTGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGTACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGCTTGTTTCTTTTTCTGCAGCTGAACGACAAaaaaa ]
consensusID : consensus_9174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATGACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAGGAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTCTTGATTTTTTGTTTACTTTATACAAGAACCATCTCCACTTGATGATACTACAAATGTAGGGAAGAGCTTCTGTTACTTCGTGGCCTCGGATTGCCATGATAATTAATTGATGAATTTCTGAGCTAACCAATCCGCGCTGATTCCACCATCCAAATCGATGAATCGAGATTACTTTGGTACAATTGGTA]
[-] EMBL AK109247 [ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATGACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAGGAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCTCTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGTCGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCATCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCGTGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGGCGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCGAGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTCTTGATTTTTTGTTTACTTTATACAAGAACCATCTCCACTTGATGATACTACAAATGTAGGGAAGAGCTTCTGTTACTTCGTGGCCTCGGATTGCCATGATAATTAATTGATGAATTTCTGAGCTAACCAATCCGCGCTGATTCCACCATCCAAATCGATGAATCGAGATTACTTTGGTACAATTGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9174#0 ------------------------------------------------------------
consensus_9174#1 ACTTCCCATTTTATATACCCACCCTCTCTCACGACAACATCATCACTTCATTATCACATG 60
consensus_9174#0 ------------------------------------------------------------
consensus_9174#1 ACAGACCAACATATAATGATGATTAAGAAAAAAAATAAAATTGTTAACAGAATACGGAAG 120
consensus_9174#0 -----------AAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCT 49
consensus_9174#1 GAAAAAAAATAAAAAAAAAACCGGCTTCTCCGCCTATCGTGCCCAGGTGTGCGCGGCTCT 180
*************************************************
consensus_9174#0 CTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGT 109
consensus_9174#1 CTTCTCCTCCATCGGCGACGAGCCACTCCTGCGATGAGATGAGATTGCCCGCATCGTCGT 240
************************************************************
consensus_9174#0 CGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCA 169
consensus_9174#1 CGTCGGCGGCGGGGCTGCAGGAGCGCATCTGGGACCTCCACGACAATCTCAGCCACGCCA 300
************************************************************
consensus_9174#0 TCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCG 229
consensus_9174#1 TCCTCTCCCTCTCCGCCTCCGCCCACCGCTGCTGCCGCCGCCGCGCCCCCGAAGGGCGCG 360
************************************************************
consensus_9174#0 TGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACTGCGGCCTGGAGCAGGAGG 289
consensus_9174#1 TGGTCGTCAAGGGGTGGCGGCGGCAGGGAGGATGTGGGGACCGCGGCCTGGAGCAGGAGG 420
***************************************** ******************
consensus_9174#0 CGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCG 349
consensus_9174#1 CGGCTGCGGCGGCCACCATGGCGGACGCGCGGAGCCTTCACGCCGTCCGCGCCGCGCTCG 480
************************************************************
consensus_9174#0 AGGACCTCGAGGGCCACCTCCATTTCCTCCACAACATTCAATTATGTCAGGTGGCAGAAC 409
consensus_9174#1 AGGACCTCGAGGGCCACCTCCATTTCCTCCACGTCAGTATCCTCCTCTCCTCCTTAATTC 540
******************************** ** * * * *
consensus_9174#0 GAGATGCCGCGATTGCTAGGCTGCAGCAAAGTCGTATTCTGCTTGCTACAAGATTGGCTG 469
consensus_9174#1 TTGATTTTTTGTTTACT---TTATACAAGAACCAT-CTCCACTTG--ATGATACT----- 589
*** * ** ** * * * * * * ** **** * * * *
consensus_9174#0 AACATAGGTGGAAGAAGCATGAAGTTATTGAGGAGGCCTTAGCTTTTGTTGATGATGCGC 529
consensus_9174#1 -ACAAATGTAGGGAAGAGCTTCTGTTACTTCGT-GGCCTCGGATTGCCATGATAAT-TAA 646
*** * ** * * * **** * * ***** * ** **** **
consensus_9174#0 TTGACAAGAGTCGATTTGTCTCACCAGAAGATGTCCGTGGGACGCATACACACAGCCAAT 589
consensus_9174#1 TTGATGAATTTC---TGAGCTAACCA----ATCCGCGCTGATTCCACCATCCAAATCGAT 699
**** * ** * ** **** ** ** * ** * * * **
consensus_9174#0 CAGTAGAGAACCAGTGCCCCAAGATACATGATTCAAACTTCTTGGTGCGTTTTTTATCCT 649
consensus_9174#1 GAATCGAG----ATTACTTTGGTACAATTGGTA--------------------------- 728
* * *** * * * * * ** *
consensus_9174#0 GTACATTAGCTATAGCTAAGAATTCTTTAAGATTTGAGAGGATTGGTGGTGCACTCGGTA 709
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 ATACCGCGATGTTTGCAGTAAGTATGCTTGCATTCTTGCAGCTGCAACAAGTGGCCTTTG 769
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 GTAAACAAACTCCAGCAGTACAATGTAGACGAGTCAATTATTTTCATTCTCAGATGTCTG 829
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 TAAAGAACACTAAAGAAAAGCATCTGGTCGTATTGTTAGCTAGAGGATGAGGAAATCATC 889
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 ATTGTTTGATGTATAGATAAGTTTTGTTCTGTTCACATTTCTTGAAAGTTTTGTTAGGAC 949
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 ACTAATCATTTCACTCCCTTGGATGGGCTGGTCTACAGCATATCTTTGATAGGAAGTTGT 1009
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 ACCACATGAGTTGTAAATGGTTTTAGATTGGCAATAGATGAACTGGCAGGGCTTGTAAGC 1069
consensus_9174#1 ------------------------------------------------------------
consensus_9174#0 TTGTTTCTTTTTCTGCAGCTGAACGACAACCACCATTTATGGACAACAG 1118
consensus_9174#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||