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Oryza sativa
cluster # 9176 cluster # 9176       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9176#0 length = 1869 sequences # 3  
consensus_9176#1 length = 1648 sequences # 2  
consensus_9176#2 length = 368 sequences # 1  

consensusID : consensus_9176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1869
fasta sequence
                              [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGATGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGGTCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCCTGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTATCTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAGAGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGATGGAACTGAGTTGATACGATTAGCATCCCGTTGCTTGCAGTATGAAGGTCGTGACCGGCCAAACCTGAAATCGGTGGTGTCTGCTCTTGGAAACCTCCAGAAAGATGCTTCTGCTCCTTCACATGCTTTACTAGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGCTATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGACTGTTGTGA]

[+] EMBL AK072216             [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGATGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGGTCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCCTGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTATCTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAGAGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGATGGAACTGAGTTGATACGATTAGCATCCCGTTGCTTGCAGTATGAAGGTCGTGACCGGCCAAACCTGAAATCGGTGGTGTCTGCTCTTGGAAACCTCCAGAAAGATGCTTCTGCTCCTTCACATGCTTTACTAGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGCTATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGACTGTTGTGA]
[+] EMBL AK102693             [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGGTCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCCTGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTATCTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAGAGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGATGGAACTGAGTTGATACGATTAGCATCCCGTTGCTTGCAGTATGAAGGTCGTGACCGGCCAAACCTGAAATCGGTGGTGTCTGCTCTTGGAAACCTCCAGAAAGATGCTTCTGCTCCTTCACATGCTTTACTAGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGCTATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATG                                                                                                                                 ]
[-] EMBL CB630757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGCTATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAG                                     ]


>consensus_9176#0 TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGA GGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAA GTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGC CGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGT GTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGG CCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTT GGAGGAGGCGATGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTG CTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGC AAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGC ATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGA TCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGG TCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCC TGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTAT CTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAG AGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGA TGGAACTGAGTTGATACGATTAGCATCCCGTTGCTTGCAGTATGAAGGTCGTGACCGGCC AAACCTGAAATCGGTGGTGTCTGCTCTTGGAAACCTCCAGAAAGATGCTTCTGCTCCTTC ACATGCTTTACTAGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGC TATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGA TGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCA ACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGA TTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCC GACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCT TGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCA AGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGG CGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACAT GATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGC TTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGT TTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATG GGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTT CGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGA CTGTTGTGA



consensusID : consensus_9176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1648
fasta sequence
                              [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGGTCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCCTGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTATCTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAGAGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGAC]

[+] EMBL AK105593             [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGGTCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCCTGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTATCTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAGAGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGATGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGAC]
[+] EMBL CB630756             [TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGAGGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAAGTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGCCGAGTACAGCCTCGACGAGCTCCGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGTGTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTGCTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGCATTCTATGTGGCTCACGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_9176#1 TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGA GGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAA GTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGC CGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGT GTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGG CCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTT GGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTG CTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGC AAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGC ATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGA TCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGG TCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCC TGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTAT CTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAG AGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGA TGAGGTTCATGAGATGCTGGAGAATGATGGATATTGTGAGGATGAAAGAGCAACATTCGA GGTATCTTTCCATTCCTGGACTGGCCAACAAGTATCTGATAGTATTCTTGTCAAGAAACA TGGAGACAGTGCTTTTCAATCCAAGGATTTTGCGACTGCAGTTGAGTGCTACTCAAGGTT CATTGACACTGGTGTAATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACAT GGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATGCAAAGAAAGCAGCAGACATATCTCC TGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCC TGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATA GAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATC GCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCC CTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCT CCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTCAAATAGCAAACCGTGGATG TGAGATTGTAAAGCTTTAATGTTATTTCGTCACAATTCATGTATATACACAACTTGCAGA CTTTTCTGAGGCGTCAAGAGTTAAAGAC



consensusID : consensus_9176#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [GAGGCGGCACGAGGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTC]

[-] EMBL CF326266             [GAGGCGGCACGAGGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAACTAGCATTC]


>consensus_9176#2 GAGGCGGCACGAGGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGAT GGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGC TTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACATGATGTG ATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCC ACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACA ACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATGGGCAAC TAGCATTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9176#0      TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGA 60
consensus_9176#1      TACGCCGGGGAGAGAGAGCCGTTGCTGCTGCTGTGAGGTGAGGGCGAGATCTAGGAGGGA 60
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAA 120
consensus_9176#1      GGCGTCCATGGGAGCTCGCTGCTCCAAGCTCTCCGTGTGCTGGTGGCCGCCGCACTTCAA 120
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGC 180
consensus_9176#1      GTCGCCGCTGCTTGAGAATGGCGCCGCCGCGGACGACGGCAGCGGCGTGCCGGTGTTCGC 180
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      CGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGT 240
consensus_9176#1      CGAGTACAGCCTCGACGAGCTACGGGTGGCGACCGACGGGTTCTCTCCCGAGCGCATCGT 240
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGG 300
consensus_9176#1      GTCGGAGCACGGCGAGAAGGCGCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGG 300
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      CCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTT 360
consensus_9176#1      CCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTT 360
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GGAGGAGGCGATGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTG 420
consensus_9176#1      GGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTGATCGGCTG 420
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      CTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGC 480
consensus_9176#1      CTGCTGCGAGAATGGCGAGCGGCTGCTCGTCGCGGAGTTCATGCCGCACGAGACCTTGGC 480
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      AAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGC 540
consensus_9176#1      AAAGCATCTCTTCCACTGGGAGACAAAGCCATTGAGCTGGGCAATGAGGGTACGAGCTGC 540
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      ATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGA 600
consensus_9176#1      ATTCTATGTGGCTCAGGCATTGGAGTACTGCAGTAGCAAAGGGAGAGCTCTCTACCATGA 600
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGG 660
consensus_9176#1      TCTGCATGCATACAGGGTTCTCTTTGATGTGGATGGTAACCCCAGACTGTCGTGCTTCGG 660
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCC 720
consensus_9176#1      TCTGATGAAGAACAGCAGGGATGGGAAGAGCTATAGTACCAATTTGGCTTTCACGCCTCC 720
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTAT 780
consensus_9176#1      TGAGTACCTTAAGACTGGCAGAGTAATTCCAGAGAGTGTGGTGTACAGTTTTGGTACTAT 780
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      CTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAG 840
consensus_9176#1      CTTGCTTGATCTCCTAAGTGGAAAACATATCCCACCAAGCCATGCGCTTGACCTTATAAG 840
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      AGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGA 900
consensus_9176#1      AGGAAAAAATTACCTGGTGTTGATGGACTCTTGCTTAGAAGGCCATGTCTCCAGCTCTGA 900
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TGGAACTGAGTTGATACGATTAGCATCCCGTTGCTTGCAGTATGAAGGTCGTGACCGGCC 960
consensus_9176#1      TG---------------------------------------------------------- 902
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      AAACCTGAAATCGGTGGTGTCTGCTCTTGGAAACCTCCAGAAAGATGCTTCTGCTCCTTC 1020
consensus_9176#1      ------------------------------------------------------------
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      ACATGCTTTACTAGGCATACAACATGATAAGGAAAATACAGAGCGAATTTCGTTATCTGC 1080
consensus_9176#1      ------------------------------------------------------------
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TATAGCGAAAGTTTATGCCAGAGCAGACCTTGATGAGGTTCATGAGATGCTGGAGAATGA 1140
consensus_9176#1      -----------------------------------AGGTTCATGAGATGCTGGAGAATGA 927
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCA 1200
consensus_9176#1      TGGATATTGTGAGGATGAAAGAGCAACATTCGAGGTATCTTTCCATTCCTGGACTGGCCA 987
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      ACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGA 1260
consensus_9176#1      ACAAGTATCTGATAGTATTCTTGTCAAGAAACATGGAGACAGTGCTTTTCAATCCAAGGA 1047
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCC 1320
consensus_9176#1      TTTTGCGACTGCAGTTGAGTGCTACTCAAGGTTCATTGACACTGGTGTAATGGTGTCTCC 1107
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCT 1380
consensus_9176#1      GACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCT 1167
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCA 1440
consensus_9176#1      TGCGGATGCAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCA 1227
consensus_9176#2      ----GAGGC--GGCACGAGGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCA 54
                          ** **   * * *  *****************************************

consensus_9176#0      AGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGG 1500
consensus_9176#1      AGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGG 1287
consensus_9176#2      AGGGATGGCATATCTCGCCATGGGAATGGAGCCTGAAGGGCATGAAGAACTCAAGCAAGG 114
                      ************************************************************

consensus_9176#0      CGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACAT 1560
consensus_9176#1      CGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACAT 1347
consensus_9176#2      CGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATAGCCCTCAAACAT 174
                      ************************************************************

consensus_9176#0      GATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGC 1620
consensus_9176#1      GATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGC 1407
consensus_9176#2      GATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGC 234
                      ************************************************************

consensus_9176#0      TTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGT 1680
consensus_9176#1      TTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGT 1467
consensus_9176#2      TTTGCCACCAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGT 294
                      ************************************************************

consensus_9176#0      TTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATG 1740
consensus_9176#1      TTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATG 1527
consensus_9176#2      TTTACAACTCCTAGGTTGGCTGTTATGACACCTCCAATATATTCATAAGTACAAAAAATG 354
                      ************************************************************

consensus_9176#0      GGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTT 1800
consensus_9176#1      GGCAACTAGCATTCAAATAGCAAACCGTGGATGTGAGATTGTAAAGCTTTAATGTTATTT 1587
consensus_9176#2      GGCAACTAGCATTC---------------------------------------------- 368
                      **************                                              

consensus_9176#0      CGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGA 1860
consensus_9176#1      CGTCACAATTCATGTATATACACAACTTGCAGACTTTTCTGAGGCGTCAAGAGTTAAAGA 1647
consensus_9176#2      ------------------------------------------------------------
                                                                                  

consensus_9176#0      CTGTTGTGA 1869
consensus_9176#1      C-------- 1648
consensus_9176#2      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)