These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1185 fasta sequence [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT] [+] EMBL AK109579 [TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGGCACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCCCGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGATGTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATACTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTGCCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCCCGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGCCGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGCGGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAGCT] consensusID : consensus_918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG] [+] EMBL CA758595 [CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCACCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAGAGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCGCGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_918#0 ------------------------------------------------------------ consensus_918#1 CGCACGTCGCTGCGGTTGGACGTCGCGGGCCACGCGGTAGACCGCGACAAACACTTGCCA 60 consensus_918#0 -----------------TATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 43 consensus_918#1 CCTTCTCTGTGTCGCCTTATCCCTCGCCACGCCGTGCGCGTGGCGCGCCCGGAAGGCGAG 120 ******************************************* consensus_918#0 AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGCTTCCGTGGCG 103 consensus_918#1 AGACATGGCGGCGATGGCGGCGGCGGCGGTGCCGAGCGACAGACCACCGTTTTCGTGGCG 180 ************************************************* ** ******* consensus_918#0 CGCGCGGCTGCTCGTGGGCGCCGTCTCCGTTCTGCACTCGGCGTCGCTCCGCCGCGACGG 163 consensus_918#1 CGCGCGGCTGCTCGTGGGCGCCGTATTCGTTCTGCTCTAGGTGTTATTATGACTTG---- 236 ************************ * ******** ** ** ** * * * * consensus_918#0 CACCGTCAACCGCTTCCTCCTGTCGCTGTTCGACCGCGTCGTGCCGCCCAACCCGGCCCC 223 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGACGCCGCCGGCGTGGCGTCCTCGGACCATGCCGTGTCCGACGACCTCCGCGTCAGGAT 283 consensus_918#1 ------------------------------------------------------------ consensus_918#0 GTTCTTTCCGGGGGCAGCTGCCAGGGATGGCGGCGGCGATCATCTGCCGGTGGTGGTATA 343 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGTCCGCGCAGTTCGACGCGCTGTG 403 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CCGTCGCTTCGCCTCGGCCATCCCGGCGGTCGTCGCGTCCGTCGACTTCCGCCTCGCGCC 463 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGAGCACGGTTTCCCGGCGCCCTACGACGACGGCAAGGCGGCACTCCGCTGGGTCCTCGC 523 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGGCGCCGGTGGCGCCCTCCCGTCACCGCCCGCCACCGTCTTCGTGGCGGGCGACAGCGC 583 consensus_918#1 ------------------------------------------------------------ consensus_918#0 GGGCGGCAACGTCGCCCACCACGTCGTCGCCCGCACGCCGAGCAGCGTGTCCGGGCTCAT 643 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTCCGCGA 703 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGG 763 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGCCACGCGGGACCACGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCG 823 consensus_918#1 ------------------------------------------------------------ consensus_918#0 GCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCGGCGGGTGGGACGCGCACCAGGACAG 883 consensus_918#1 ------------------------------------------------------------ consensus_918#0 GCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTCGTCGC 943 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAG 1003 consensus_918#1 ------------------------------------------------------------ consensus_918#0 GCTGCTCACCGAAGTCACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCT 1063 consensus_918#1 ------------------------------------------------------------ consensus_918#0 TGAACTTGCAGTAGCCGACATTACAGTTTGCTTCACTGTATCGCTAGCTCGTCTCCACTC 1123 consensus_918#1 ------------------------------------------------------------ consensus_918#0 ACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAGACGAG 1183 consensus_918#1 ------------------------------------------------------------ consensus_918#0 CT 1185 consensus_918#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||