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Oryza sativa
cluster # 9182 cluster # 9182       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9182#0 length = 930 sequences # 5  
consensus_9182#1 length = 385 sequences # 1  

consensusID : consensus_9182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 930
fasta sequence
                              [CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC-CATT-GT-ATAT-GGTTT-GAACC-TTC-TTTTC-ATTC-AA-C-CCAATGACGA-GGAT-CCCTTGAA-CCATGATGC-TGCGGCTGTCCTCCGAGATGA-CCCACAAAAG-TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG-GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA-CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA]

[+] EMBL CF326859             [CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATATGGGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTG                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK073821             [                             CAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTAC   GATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATAC TATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGACTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATAT GGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTGAA CCATGATGC TGCGGCTGTCCTCCGAGATGA CCCACAAAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTT                  ]
[+] EMBL C74337               [                                    CACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGNCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTNGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI806782             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATCCTGCGTGAAGACTGGAAGCCTGTCTTGNATATCAATACGCATT GT ATAT GGTTTGGAACCATTC TTTTCTATTCTAA CGCCTATGACGA GGAT CCCTTGAA CCATGATGCGTGCGGCTGTCCTCCGAGATGA CCCAC AAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAGTGCTATGTCGACAGGGTGCATTTTCCAAGGTNTAAGTAAAGGTGTGTGTNTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTATCTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAA  ]
[+] EMBL AU172791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              anacC CATTGGTAAAAG GGTTT GACCC TTCTTTTTC ATTC AACC CCAATGACGAGGGATCCCCTTGAACCCATGATGC TGCGGCTGTCNTCCGAGATGACCCCCCAAAAGTTTCCGGAGAAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA]


>consensus_9182#0 CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTC TGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCT CCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAA GATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAA GCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAA AACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCG GCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTA CTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTG ATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATA TCAATACCATTGTATATGGTTTGAACCTTCTTTTCATTCAACCCAATGACGAGGATCCCT TGAACCATGATGCTGCGGCTGTCCTCCGAGATGACCCACAAAAGTTCCGGAGGAATGTTC AGACGGCGATGTCGGGAGGCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT GTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTACTCCTGAATACCGTTCTG CAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAA TGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGT CAAATGATGTTTGGAACTTGGCAAAAAAAA



consensusID : consensus_9182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence
                              [ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF326858             [ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9182#1 ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGA CCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGA CGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTG TGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAA TTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAA TGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAA AAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9182#0      CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTC 60
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      TGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCT 120
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      CCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAA 180
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      GATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAA 240
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      GCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAA 300
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      AACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCG 360
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      GCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTA 420
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      CTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTG 480
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      ATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATA 540
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      TCAATACCATTGTATATGGTTTGAACCTTCTTTTCATTCAACCCAATGACGAGGATCCCT 600
consensus_9182#1      ---ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCT 57
                         ** ****************** **** ******************************

consensus_9182#0      TGAACCATGATGCTGCGGCTGTCCTCCGAGATGACCCACAAAAGTTCCGGAGGAATGTTC 660
consensus_9182#1      TGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTC 117
                      *** ******** ***** ****************** **********************

consensus_9182#0      AGACGGCGATGTCGGGAGGCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 720
consensus_9182#1      AGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 177
                      ******* *********** ****************************************

consensus_9182#0      GTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTACTCCTGAATACCGTTCTG 780
consensus_9182#1      GTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTG 237
                      *************************** ** ***** ******** ***** ***** **

consensus_9182#0      CAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAA 840
consensus_9182#1      CAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAA 297
                      **** ********************* *********************************

consensus_9182#0      TGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGT 900
consensus_9182#1      TAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGT 357
                      * ************************************************* ********

consensus_9182#0      CAAATGATGTTTGGAACTTGGCAAAAAAAA 930
consensus_9182#1      CAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 385
                      ****  *       **      ******  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)