These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 930 fasta sequence [CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC-CATT-GT-ATAT-GGTTT-GAACC-TTC-TTTTC-ATTC-AA-C-CCAATGACGA-GGAT-CCCTTGAA-CCATGATGC-TGCGGCTGTCCTCCGAGATGA-CCCACAAAAG-TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG-GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA-CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA] [+] EMBL CF326859 [CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATATGGGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTG ] [+] EMBL AK073821 [ CAAACAGCACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTAC GATGTTGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAAAACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCGGCCTGACGAAGGATAC TATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTACTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTGACTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATATCAATAC CATT GT ATAT GGTTT GAACC TTC TTTTC ATTC AA C CCAATGACGA GGAT CCCTTGAA CCATGATGC TGCGGCTGTCCTCCGAGATGA CCCACAAAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTT ] [+] EMBL C74337 [ CACAAAAAGGCAGCAGCTTTGCTCTGCTCGGGTGTTCCGNCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCTCCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTNGAACCTCTTTAAGATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAAGCA ] [+] EMBL BI806782 [ TATCCTGCGTGAAGACTGGAAGCCTGTCTTGNATATCAATACGCATT GT ATAT GGTTTGGAACCATTC TTTTCTATTCTAA CGCCTATGACGA GGAT CCCTTGAA CCATGATGCGTGCGGCTGTCCTCCGAGATGA CCCAC AAAG TTCCGGAGGAATGTTCAGACGGCGATGTCGGGAGTGCTATGTCGACAGGGTGCATTTTCCAAGGTNTAAGTAAAGGTGTGTGTNTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTATCTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAA ] [+] EMBL AU172791 [ anacC CATTGGTAAAAG GGTTT GACCC TTCTTTTTC ATTC AACC CCAATGACGAGGGATCCCCTTGAACCCATGATGC TGCGGCTGTCNTCCGAGATGACCCCCCAAAAGTTTCCGGAGAAATGTTCAGACGGCGATGTCGGGAG GCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTA CTCCTGAATACCGTTCTGCAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAATGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGTCAAATGATGTTTGGAACTTGGCAAAAAAAA] consensusID : consensus_9182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF326858 [ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCTTGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTCAGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGTGTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTGCAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAATAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9182#0 CAAAAGGCCCAAACTCTCTCTCTCTCCCGCAAACAGCACAAAAAGGCAGCAGCTTTGCTC 60 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 TGCTCGGGTGTTCCGCCGCCACCGCCGCCGCCGACGAATCACTCCGGCGGGCTCTTCCCT 120 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 CCTCCTCGTCGTCGTCCACCGGCGACCGGCGCTTCGTACGAAGATGTTGAACCTCTTTAA 180 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 GATAAAGGGACAGAAGAAGGAAGAGGCGGCAAATACAAATGGGAGACCTCCTGCTAAGAA 240 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 GCAAAGTCCAGGAGAATTACGTCTCCATAAAGACATTGCTGAGCTTAATCTTCCAAAGAA 300 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 AACCAACATTACTTTTCCTAATGGAAAGGATGATCTGATGAACATTGAGATTACTCTTCG 360 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 GCCTGACGAAGGATACNTATGTGGGTGGAGCTTTTGTTTTCACTTTACAAGTTCCTCCTA 420 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 CTTACCCTCACGAGCCGCCCAAGGTCAAGTGCACGACTAAGGTTTATCACCCTAATATTG 480 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 ATTTGGACGGAAATGTCTGCCTGAATATCCTGCGTGAAGACTGGAAGCCTGTCTTGAATA 540 consensus_9182#1 ------------------------------------------------------------ consensus_9182#0 TCAATACCATTGTATATGGTTTGAACCTTCTTTTCATTCAACCCAATGACGAGGATCCCT 600 consensus_9182#1 ---ATCCCATTGTATATGGTTTGACCCTTTTTTTCATTCAACCCAATGACGAGGATCCCT 57 ** ****************** **** ****************************** consensus_9182#0 TGAACCATGATGCTGCGGCTGTCCTCCGAGATGACCCACAAAAGTTCCGGAGGAATGTTC 660 consensus_9182#1 TGACCCATGATGTTGCGGTTGTCCTCCGAGATGACCCCCAAAAGTTCCGGAGGAATGTTC 117 *** ******** ***** ****************** ********************** consensus_9182#0 AGACGGCGATGTCGGGAGGCTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 720 consensus_9182#1 AGACGGCAATGTCGGGAGGTTATGTCGACAGGGTGCATTTTCCAAGGTGTAAGTAAAGGT 177 ******* *********** **************************************** consensus_9182#0 GTGTGTTTGCTGGTGCTCTGTGGCTGGCTTCTGCCCACCTTACTCCTGAATACCGTTCTG 780 consensus_9182#1 GTGTGTTTGCTGGTGCTCTGTGGCTGGTTTTTGCCCCCCTTACTCTTGAATCCCGTTTTG 237 *************************** ** ***** ******** ***** ***** ** consensus_9182#0 CAATCTGAACAATGTGACTTGCCCAAGAAATGACATATTTGTGTTACATTTGAGTATGAA 840 consensus_9182#1 CAATTTGAACAATGTGACTTGCCCAAAAAATGACATATTTGTGTTACATTTGAGTATGAA 297 **** ********************* ********************************* consensus_9182#0 TGATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAACTGAAATGT 900 consensus_9182#1 TAATGCTTGGTTGAAATGTACTGGAATCATGTAAGCGCAACGATGTTTAAATTGAAATGT 357 * ************************************************* ******** consensus_9182#0 CAAATGATGTTTGGAACTTGGCAAAAAAAA 930 consensus_9182#1 CAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 385 **** * ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||