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Oryza sativa
cluster # 9192 cluster # 9192       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9192#0 length = 1168 sequences # 5  
consensus_9192#1 length = 537 sequences # 1  

consensusID : consensus_9192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1168
fasta sequence
                              [TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT]

[+] EMBL AK103795             [TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT]
[+] EMBL AF074755             [               GGAGCGGCGGCGAA CCAGCTCGTTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCNTGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATANCTGTTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATNAGGAACAGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK101965             [                     GCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAA    ]
[+] EMBL CF307358             [                                                               GACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA998935             [                                                                                                                                                                                                                                                                                                                                                                                                                              GCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTT CCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTC                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_9192#0 TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGC GGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCAT CTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCG AGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTC GGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGG GAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAA GGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGG GACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTC TCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCG ACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTG ATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATG CTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAG CATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTAC TATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCA TGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAG ATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATA ATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATA GCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACAT TTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCA TAATATTGTCTGAAATAAATAAAATTAT



consensusID : consensus_9192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC]

[+] EMBL CF327725             [GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC]


>consensus_9192#1 GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCG GAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGG CGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCA TGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTG CATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTA CTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGG ATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGC CTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAG ATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9192#0      TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGC 60
consensus_9192#1      ---------------------------------------------GCCCAGCTCTACGCC 15
                                                                   * *     *  ** *

consensus_9192#0      GGCGACGGCGACGGCT-AGGACCACGTGACG--CGGATCAGCTCGGAGGCAGCGACGACC 117
consensus_9192#1      GGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATC 75
                      **** *********** **************  ****************** ** *** *

consensus_9192#0      CATCTCTGATCTCCC---TCACG-TTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTC 173
consensus_9192#1      CATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTC 135
                      *******  ******   ***** ********* * *** **** ***  **********

consensus_9192#0      GACGGCGAG-------------------------------AGTCATGCAGGGGGCGCGTG 202
consensus_9192#1      GACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCG 195
                      *********                               ****************** *

consensus_9192#0      TTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGC 262
consensus_9192#1      TTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGC 255
                      ************************* ** * ****** ***************** ****

consensus_9192#0      TTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCAT 322
consensus_9192#1      TTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCAT 315
                      ***************************** ******************************

consensus_9192#0      TTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 382
consensus_9192#1      TTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 375
                      **** ******* ***********************************************

consensus_9192#0      GTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTG 442
consensus_9192#1      GTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTG 435
                      ******************* ** ************************** **********

consensus_9192#0      GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTG 502
consensus_9192#1      GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTG 495
                      ******************************************* ****************

consensus_9192#0      TCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATG 562
consensus_9192#1      TCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC------------------ 537
                      ********** ** ****************************                  

consensus_9192#0      ACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGG 622
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      TCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTG 682
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      CGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAA 742
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      AAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAG 802
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      ATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCA 862
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      GTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACT 922
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      TTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGA 982
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      TACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGA 1042
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      TGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGA 1102
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      ATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAA 1162
consensus_9192#1      ------------------------------------------------------------
                                                                                  

consensus_9192#0      AATTAT 1168
consensus_9192#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)