These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1168 fasta sequence [TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT] [+] EMBL AK103795 [TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAATTAT] [+] EMBL AF074755 [ GGAGCGGCGGCGAA CCAGCTCGTTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCNTGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATANCTGTTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATNAGGAACAGTGCT ] [+] EMBL AK101965 [ GCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGCGGCGACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCAGTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACTTTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGATACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAAAA ] [+] EMBL CF307358 [ GACGGCGACGGCTAGGACCACGTGACGCGGATCAGCTCGGAGGCAGCGACGACCCATCTCTGATCTCCCTCACGTTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTCGACGGCGAGAGTCATGCAGGGGGCGCGTGTTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGCTTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCATTTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATAT ] [+] EMBL CA998935 [ GCCTGGGACATGCCTCAGAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTGTCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATGACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTT CCATGGGCTTCAAAAGCAGGTCTTAAGTGCACAGATCTTATGTC ] consensusID : consensus_9192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC] [+] EMBL CF327725 [GCCCAGCTCTACGCCGGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATCCATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTCGACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCGTTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGCTTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCATTTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGCGTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTGGTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTGTCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9192#0 TGGCTATCGCGGAAGGGAGCGGCGGCGAACCCAGCTCGGTGAGTCGTCGTCGGCGGCGGC 60 consensus_9192#1 ---------------------------------------------GCCCAGCTCTACGCC 15 * * * ** * consensus_9192#0 GGCGACGGCGACGGCT-AGGACCACGTGACG--CGGATCAGCTCGGAGGCAGCGACGACC 117 consensus_9192#1 GGCGGCGGCGACGGCTGAGGACCACGTGACGTGCGGATCAGCTCGGAGGCAACGGCGATC 75 **** *********** ************** ****************** ** *** * consensus_9192#0 CATCTCTGATCTCCC---TCACG-TTCAGAGGCGCGACCAAGCGTCGAGGGGGAGCGCTC 173 consensus_9192#1 CATCTCTTCTCTCCCCCCTCACGATTCAGAGGCTCAACCGAGCGGCGAACGGGAGCGCTC 135 ******* ****** ***** ********* * *** **** *** ********** consensus_9192#0 GACGGCGAG-------------------------------AGTCATGCAGGGGGCGCGTG 202 consensus_9192#1 GACGGCGAGGTGCGCGCACGCGAATCCAGTTCCCCTAGAGAGTCATGCAGGGGGCGCGCG 195 ********* ****************** * consensus_9192#0 TTAATCTGAAGGGGTGGCAACAGGCTGCTGTTGCATTCGGTTCTGCATTTGGGGCCTTGC 262 consensus_9192#1 TTAATCTGAAGGGGTGGCAACAGGCAGCGGGTGCATTTGGTTCTGCATTTGGGGCATTGC 255 ************************* ** * ****** ***************** **** consensus_9192#0 TTGACCCTAGAAGAGCTGATCTGATAGCTGCTCTTGGGGAGACTACTGGGAAGCCAGCAT 322 consensus_9192#1 TTGACCCTAGAAGAGCTGATCTGATAGCTACTCTTGGGGAGACTACTGGGAAGCCAGCAT 315 ***************************** ****************************** consensus_9192#0 TTCAGCGTGTGCTTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 382 consensus_9192#1 TTCACCGTGTGCCTCAGCGGATGAGGAACAGTGCTGAAGGCAGGGATGTTCTCCTGGAGC 375 **** ******* *********************************************** consensus_9192#0 GTCCTCGAGTTATATCCACACAAGTTTCTCATGCCTGGGACATGCCTCAGAACACATTTG 442 consensus_9192#1 GTCCTCGAGTTATATCCACGCAGGTTTCTCATGCCTGGGACATGCCTCATAACACATTTG 435 ******************* ** ************************** ********** consensus_9192#0 GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCGGATGACCGCCCACCTG 502 consensus_9192#1 GTGCAGCATATGCTCAGTTCATGGGATCAAGGAACTTCTCACCAGATGACCGCCCACCTG 495 ******************************************* **************** consensus_9192#0 TCCGTTTCATGGATACAGATGAGCTTGCGTATGTTGCGACCCGCGCCCGTGAAGTCCATG 562 consensus_9192#1 TCCGTTTCATTGACACAGATGAGCTTGCGTATGTTGCGACCC------------------ 537 ********** ** **************************** consensus_9192#0 ACTTTTGGCATGTGCTGTTCGGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGG 622 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 TCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCTTTCAGTCGTTGGGGGCTCTG 682 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 CGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAA 742 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 AAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAG 802 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 ATTTGGATGAAGTGAGGAGGAACTGGGGAATTATACCATGCCCTGATCCCAAAAGGAGCA 862 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 GTGTTTAGACTTTTAGATCGGTACATTTTGCATGAAAGATGTCTGAACTTGGTTTTCACT 922 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 TTGTCTACGTTAGTATTAGCTCTTCCCTTTCAAGAATAATAGCAAGAGTTATGCTATTGA 982 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 TACCTAAAAAAACTAGTAATTCTCTTTAACTTAGCATAGCAACTAAGCTTGCAATGTTGA 1042 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 TGTTCCCTTTAACAATAGTGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGA 1102 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 ATGCCGGTACTTCGCTATGGACAGAAGAAAACATATCATAATATTGTCTGAAATAAATAA 1162 consensus_9192#1 ------------------------------------------------------------ consensus_9192#0 AATTAT 1168 consensus_9192#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||