These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1475 fasta sequence [AGCTGCAAATGTTGGTTCAAGTGATTATGAATATCTCCTCTCAATGGCAATTGGTACATTGACTCTGGAGAGGGTACAACAGCTCATTGCAGAGAAGGGCAGAATGGAGAATGAAGTAGCTGAACTGAAGAGAACAAGGCCAAAATCACTTTGGATGAGAGACCTTGATGCATTCGAGAAGGAACTGGATGCGCTTGATGAGAAGGACAGCATGGATGCTGAGGAGAGAAGAGCTACGAGGAATGCTGGAGGTGGCGCTGCACCTAATAAAGCAGCGCCCAAGAGACGACCTAGAAAGACAGCGACTAATACTCAGGCGGCAGAAAGCTCTGACGGGAATGCCGCTGCTCCGGCGGTTCCAAAACCTGCGGCACCACGTAAGAAACCAGCTGGAAAGGCAAGTTTGGCTGATAGCGAGGATGAAGATTATATAGCAGCAATCCCGAAACCTGCCGCACAGAAGAAGCAGCCAGCTAAGAAGGCAAGCACCCAGTTGAGTGATGACGAGGACGACGAAGTTCTTGCTCTAAAAGACCGATTGGCTGCTTACAATCTTGATGACCATTCCGAAGATACTGCTATGGAAACTGAGACTACAGAAGAACAGGCAAAAGGGAAGAAAGGGAGGAAGGAACCAAGCAAAAGAGGAGCAGCAAAGAAGGCCATATCATCCCTAGCTGTGATATCTGATGACGAGGAAGACGAAACAGTGCCCATCGATGAGGACGACGAGGATGATTTCGCCATGGAAGAAGTGCCGGTCAAGAAAGGTAGAGGAAAGAAGCCCGCCGCTGAGAAGCCGAAGGCTGCAACCAGGAAGAGGGCGCCAGCTCAGGGGAAGTCCATGAGGCAGAAAGTGATGGAAGAAATGTTCAAGCC-TACAGAGGAC-AGCAGCACCAGCGCTCCATCTCCTGAGAAGAAGGTGCGCAAGATGAGGGCCTCTCCCTTCC-ACAAGAAGAGCGGCTCTGTCTTGCAGAGGGCCTCAACAGCTTCCACGAGCACTGAAGAAACCGAGTCATCCTCCCCATCAGGTAGCTCTGCCGAGCCAGTCGCAGCGAGGCCGAAACGGCAAACACGGGGGAACAAGAAGAGTTACCAGGAGGTGCAGGAGCTGAGCGATGATGACACTGAGGACGAAGTGCAGGATATCAGCGATGATTCCGACTTCGCCGGCTCTGACTTTGGCGAGGACGACGACTGAATGTCCCCTGAATTTAACTACTGGAACAATGTAGGATCAACTCCGTAGCGAGCGGTGTGACTGTCTGCCTGTTTGCTGAGTCGTTAGATTGATTGACCTGTCTGTTACATTGGTGATGCTTGCTGAGATGCATCTCTTGTGCGTCGTGTGCTCTATTCAGTTCATCAGTTGCTGAGACATTGATCCGTGTAACTTACTTGACACTTGTGCTTTGTGTGATCAGCATGGGTTTTTCAGCTGTGTGTAAAAAAAAAAAAAAAAAAACTCGAAACTA] [+] EMBL AK063335 [AGCTGCAAATGTTGGTTCAAGTGATTATGAATATCTCCTCTCAATGGCAATTGGTACATTGACTCTGGAGAGGGTACAACAGCTCATTGCAGAGAAGGGCAGAATGGAGAATGAAGTAGCTGAACTGAAGAGAACAAGGCCAAAATCACTTTGGATGAGAGACCTTGATGCATTCGAGAAGGAACTGGATGCGCTTGATGAGAAGGACAGCATGGATGCTGAGGAGAGAAGAGCTACGAGGAATGCTGGAGGTGGCGCTGCACCTAATAAAGCAGCGCCCAAGAGACGACCTAGAAAGACAGCGACTAATACTCAGGCGGCAGAAAGCTCTGACGGGAATGCCGCTGCTCCGGCGGTTCCAAAACCTGCGGCACCACGTAAGAAACCAGCTGGAAAGGCAAGTTTGGCTGATAGCGAGGATGAAGATTATATAGCAGCAATCCCGAAACCTGCCGCACAGAAGAAGCAGCCAGCTAAGAAGGCAAGCACCCAGTTGAGTGATGACGAGGACGACGAAGTTCTTGCTCTAAAAGACCGATTGGCTGCTTACAATCTTGATGACCATTCCGAAGATACTGCTATGGAAACTGAGACTACAGAAGAACAGGCAAAAGGGAAGAAAGGGAGGAAGGAACCAAGCAAAAGAGGAGCAGCAAAGAAGGCCATATCATCCCTAGCTGTGATATCTGATGACGAGGAAGACGAAACAGTGCCCATCGATGAGGACGACGAGGATGATTTCGCCATGGAAGAAGTGCCGGTCAAGAAAGGTAGAGGAAAGAAGCCCGCCGCTGAGAAGCCGAAGGCTGCAACCAGGAAGAGGGCGCCAGCTCAGGGGAAGTCCATGAGGCAGAAAGTGATGGAAGAAATGTTCAAGCC TACAGAGGAC AGCAGCACCAGCGCTCCATCTCCTGAGAAGAAGGTGCGCAAGATGAGGGCCTCTCCCTTCC ACAAGAAGAGCGGCTCTGTCTTGCAGAGGGCCTCAACAGCTTCCACGAGCACTGAAGAAACCGAGTCATCCTCCCCATCAGGTAGCTCTGCCGAGCCAGTCGCAGCGAGGCCGAAACGGCAAACACGGGGGAACAAGAAGAGTTACCAGGAGGTGCAGGAGCTGAGCGATGATGACACTGAGGACGAAGTGCAGGATATCAGCGATGATTCCGACTTCGCCGGCTCTGACTTTGGCGAGGACGACGACTGAATGTCCCCTGAATTTAACTACTGGAACAATGTAGGATCAACTCCGTAGCGAGCGGTGTGACTGTCTGCCTGTTTGCTGAGTCGTTAGATTGATTGACCTGTCTGTTACATTGGTGATGCTTGCTGAGATGCATCTCTTGTGCGTCGTGTGCTCTATTCAGTTCATCAGTTGCTGAGACATTGATCCGTGTAA ] [+] EMBL AU062764 [ ATACTCAGGCGGCAGAAAGCTCNNACGGGAATGCCGCTGCTCCGGCGGTTCCAAAACCTGCGGNACCACGTAAGAAACCAGCTGGAAAGGCAAGTTTGGCTGATAGCGAGGATGAAGATTATATAGCAGCAATCNCGAAACCTGCCGCACAGAAGANGCAGCCANCTAAGACGGCAAGCA ] [+] EMBL CA999316 [ ATGCCGCTGCTCCGGCGGTTCCAAAACCTGCGGCACCACGTAAGAAACCAGCTGGAAAGGCAAGTTTGGCTGATAGCGAGGATGAAGATTATATAGCAGCAATCCCGAAACCTGCCGCACAGAAGAAGCAGCCAGCTAAGAAGGCAAGCACCCAGTTGAGTGATGACGAGGACGACGAAGTTCTTGCTCTAAAAGACCGATTGGCTGCTTACAATCTTGATGACCATTCCGAAGATACTGCTATGGAAACTGAGACTACAGAAGAACAGGCAAAAGGGAAGAAAGGGAGGAAGGAACCAAGCAAAAGAGGAGCAGCAAAGAAGGCCATATCATCCCTAGCTGTGATATCTGATGACGAGGAAGACGAAACAGTGCCCATCGATGAGGACGACGAGGAT ] [+] EMBL CF327985 [ catAGGCAAGCACCCAGTTGAGTGATGACGAGGACGACGAAGTTCTTGCTCTAAAAGACCGATTGGCTGCTTACAATCTTGATGACCATTCCGAAGATACTGCTATGGAAACTGAGACTACAGAAGAACAGGCAAAAGGGAAGAAAGGGAGGAAGGAACCAAGCAAAAGAGGAGCAGCAAAGAAGGCCATATCATCCCTAGCTGTGATATCTGATGACGAGGAAGACGAAACAGTGCCCATCGATGAGGACGACGAGGATGATTTCGCCATGGAAGAAGTGCCGGTCAAGAAAGGTAGAGGAAAGAAGCCCGCCGCTGAGAAGCCGAAGGCTGCAACCAGGAAGAGGGCGCCAGCTCAGGGGAAGTCCATGAGGCAGAAAGTGATGGAAGAAATGTTCAAGCC TACAGAGGAC AGCAGCACCAGCGCTCCATCTCCTGAGAAGAAGGTGCGCAAGATGAGGGCCTCTCCCTTCC ACAAGAAGAGCGGCTCTGTCTTGCAGAGGGCCTCAACAGCTTCCACGAGCACTGAAGAAACCGAGTCATCCTCCCCATCAGGTAGCTCTGCCGAGCCAGTCGCAGCGAGGCCGAAACGGCAAACACGGGGGAACAAGAAGAGTTACCAGGAGGTGCAGGAGCTGAGCG ] [-] EMBL CF327986 [ GCAACCAGGAAGAGGGCGCCAGCTCAGGGGAAGTCCATGAGGCAGAAAGTGATGGAAGAAATGTTCAAGCC TACAGAGGAC AGCAGCACCAGCGCTCCATCTCCTGAGAAGAAGGTGCGCAAGATGAGGGCCTCTCCCTTCC ACAAGAAGAGCGGCTCTGTCTTGCAGAGGGCCTCAACAGCTTCCACGAGCACTGAAGAAACCGAGTCATCCTCCCCATCAGGTAGCTCTGCCGAGCCAGTCGCAGCGAGGCCGAAACGGCAAACACGGGGGAACAAGAAGAGTTACCAGGAGGTGCAGGAGCTGAGCGATGATGACACTGAGGACGAAGTGCAGGATATCAGCGATGATTCCGACTTCGCCGGCTCTGACTTTGGCGAGGACGACGACTGAATGTCCCCTGAATTTAACTACTGGAACAATGTAGGATCAACTCCGTAGCGAGCGGTGTGACAGTCTGCCTGTTTGCTGAGTCGTTAGATTGATTGACCTGTCTGTTACATTGGTGATGCTTGCTGAGATGCATCTCTTGTGCGTCGTGTGCTCTATTCAGTTCATCAGTTGCTGAGAaaaaa ] [-] EMBL CA753544 [ gnAGAGG GCCAGCTCAGGGG AGTCCATGAAGCAGAAAGTGATGGAAGAAATGNTC AGCCTTACAGA GACAAGCAGCACCAGCGCTCCATCTCCTGAGAAGAA GTGCGCAAGATGAGNGCCTCT CCTTCCAACAAGAAGAGCGGCTCTGTCTTGCAGAGGGCCTCAACAGCTTCCACGAGCACTGAAGAAACCGAGTCATCCTCCCCATCAGGTAGCTCTGCCGAGCCAGTCGCAGCGAGGCCGAAACGGCAAACACGGGGGAACAAGAAGAGTTACCAGGAGGTGCAGGAGCTGAGCGATGATGACACTGAGGACGAAGTGCAGGATATCAGCGATGATTCCGACTTCGCCGGCTCTGACTTTGGCGAGGACGACGACTGAATGTCCCCTGAATTTAACTACTGGAACAATGTAGGATCAACTCCGTAGCGAGCGGTGTGACTGTCTGCCTGTTTGCTGAGTCGTTAGATTGATTGACCTGTCTGTTACATTGGTGATGCTTGCTGAGATGCATCTCTTGTGCGTCGTGTGCTCTATTCAGTTCATCAGTTGCTGAGACATTGATCCGTGTAACTTACTTGACACTTGTGCTTTGTGTGATCAGCATGGGTTTTTCAGCTGTGTGTAAAAAAAAAAAAAAAAAAACTCGAAACTA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||