cluster # 9199

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Oryza sativa
cluster # 9199 cluster # 9199 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9199#0 length = 880 sequences # 3
consensus_9199#1 length = 655 sequences # 1

consensus_9199#2 length = 220 sequences # 1
consensus_9199#3 length = 220 sequences # 1

consensusID : consensus_9199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 880
fasta sequence

                              [CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTT-GATGGTCTTG-AAAT-GTTTGG-TTTATTATCACCACCAATAGTT-CAGGCAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATA-CCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA]

[+] EMBL BP184624             [CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTCCAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGCTGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTT GATGGTCTTG AAAT GTTTGG TTTATTATCACCACCAATAGTT CAGGCAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU068239             [                                                                                                                                                                                               GTTGGATGGTCTTGAAAATGGTTTGGTTTTATTATCACCACCAATAGTTCCAGGCAATTTGGNCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATGTTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCCTGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCAACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATA CCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTCCAGGCACCAGNCCGGGCACATTATCGAAAAGGAGATTNCGAAGCAATTGTGTTGAGAAGGGTAAANANCCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAA ]




>consensus_9199#0
CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTC
CAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGC
TGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGC
CTCCAGGATCAGTTGATGGTCTTGAAATGTTTGGTTTATTATCACCACCAATAGTTCAGG
CAATTTGGGCGCGGGACAGAGATCACATCTGTACAGAGTACTGGAGATCAAGGCCCCATG
TTCTCATTGAGGATCCAAACAATCGGCATATGTTATCTCAGGGTCCACCTCTCCTTGCCC
TGAGGGGTCTCATCCAAAGGGCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGA
CGAACAGCAACAATTTGGATGATAGCTCCAGGCAACAGGCCGCGCACATTATCGAAGAGG
AGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATG
GCATGAATATTTTTTTTTCCGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCC
CCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCA
GGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGC
TAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTA
GGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTCCATGCCAGATGTATCTGC
TATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCCCCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTTCNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA]

[+] EMBL BM421983             [CCAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCCCCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTTCNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTCCTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAGCCGCGCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGGCTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTTCAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAATGTCCATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA]




>consensus_9199#1
CCAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCC
CCCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNT
TCNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGT
CCTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAGCCGC
GCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGG
CTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAA
ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC
CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG
TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTT
CAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAATGTCC
ATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA

consensusID : consensus_9199#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [GCCAGGGTTAAGCAGATTTAAAACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATACCATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATGTGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF328473             [GCCAGGGTTAAGCAGATTTAAAACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATACCATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATGTGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9199#2
GCCAGGGTTAAGCAGATTTAAAACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATT
TTTTCCATTTTTGAGCCCATACCATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGA
CTGACTTGGGGACAAACAAATGTGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTT
CCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9199#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [CGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF328474             [CGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9199#3
CGACAGGGTTAAGCAGATCTAAAACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCAT
TCTTTCCATTCTTGAGCCCATACCATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTG
ACTGACTTGTGTACATACAGATGTGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTT
TCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CGGAAATACTGGATGCTGGGATGCAAGGGCCTCTGTTTATGGTAAAATTAGAGAACTGTC 60
consensus_9199#1      ------------------------------------------------------------
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CAGGTGAAGTTTTCATTAACTTATCTCCAACCAAGTGTTGGAACATGGTCCGTGAAAGGC 120
consensus_9199#1      ------------------------------------------------------------
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      TGAACATGGAAATAAGGAGGCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGC 180
consensus_9199#1      ------------------------------------------------------------
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CTCCAGGATCAGTTGATGGTCTTGAAATGTTTGGTTTATTATCACCACCAATAGTTCAGG 240
consensus_9199#1      -----------------------------------------------------------C 1
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CAATTTGGGCGCGGGACAGAGATCAC-ATCTG-TACAGAGTACT-GGAGATCAAGG---- 293
consensus_9199#1      CAATTTGGGCCGGGACCAGAGATCACCATNTGGTCCAGAGTACTCGGGGATTCTTGGCCC 61
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CCCCATGTTCTCATTGAGGATCCAAACAA-TCGGCATATGTTATCTCAGGGTCCACCT-- 350
consensus_9199#1      CCCCGTTNTTTCCCTGGGGACCCCCCCCCCTCGCCGAATTTTTTCCCNGGGGCCCCCNTT 121
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CTCCTTGCCCT---GAGGGGTC-TCATCCAAAGGG--CTAACCGGGATGAATTGCAAGTC 404
consensus_9199#1      CNCCTTCCCCCTAGGAGGGGTCCTCATCCCAAAGGGTCTAACCGGGATGAATTGCAAGTC 181
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      CTGCGGAGTTTGATGACGAACAGCAAC-AATTTGGATGATAGCTCCAGGCAACAGGCCGC 463
consensus_9199#1      CTGCGGAGTTTGATGACGAACAGCCACCAATTTGGATGATAGCTCCAGGCAACAG-CCGC 240
                                                                                  

consensus_9199#2      ------------------------------------------------------------
consensus_9199#3      ------------------------------------------------------------
consensus_9199#0      GCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGG 523
consensus_9199#1      GCACATTATCGAAGAGGAGATTGCGAAGCAATTGTGCTGAGAAGGGTAAATACCGGCTGG 300
                                                                                  

consensus_9199#2      --------------------------------------GCCAGGGTTAAGCAGATTTAAA 22
consensus_9199#3      -------------------------------------CGACAGGGTTAAGCAGATCTAAA 23
consensus_9199#0      CTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGAC-AGGGTTAAGCAGATCTAAA 582
consensus_9199#1      CTGTTGTACTTTAGATGGCATGAATATTTTTTTTTCCGACCAGGGTTAAGCAGATCTAAA 360
                                                               ************** ****

consensus_9199#2      ACCGAGGGTTGGTTTTCCCCTTGCCTTTCATGCCCATTTTTTCCATTTTTGAGCCCATAC 82
consensus_9199#3      ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 83
consensus_9199#0      ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 642
consensus_9199#1      ACCGAGGCTTGCTTCTCCCCTTGCCTTTCATGCCCATTCTTTCCATTCTTGAGCCCATAC 420
                      ******* *** ** *********************** ******** ************

consensus_9199#2      CATAAAATTTATGCTTCAGGGGACTGTTGTTTCATTGACTGACTTGGGGACAAACAAATG 142
consensus_9199#3      CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 143
consensus_9199#0      CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 702
consensus_9199#1      CATAAGATTTATGCTTCAGGTGACTGTTGTTTCATTGACTGACTTGTGTACATACAGATG 480
                      ***** ************** ************************* * *** *** ***

consensus_9199#2      TGTTGTGTTCCTAAATGGTAGCCAGCTGCCTCATTTTTCCTGTAAAAAAAAAAAAAAAAA 202
consensus_9199#3      TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTNNAAAAAAAAAAAAAAA 203
consensus_9199#0      TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTT 762
consensus_9199#1      TGTTGTGTTCCTAAATGCTAGCCAGCTGCCTCATCTTTCCTGTAAAACTCATGTTGTGTT 540
                      ***************** **************** ********  **   *         

consensus_9199#2      AAAAAAAAAAAAAAAAAA------------------------------------------ 220
consensus_9199#3      AAAAAAAAAAAAAAAAA------------------------------------------- 220
consensus_9199#0      CAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAAATGTC 822
consensus_9199#1      CAGCTGTCCAGTTAAGTAGGGTTGCTTCTAGTTCAGAGATCTTTGGACAGTCAAA-TGTC 599
                       *       *   **                                             

consensus_9199#2      ----------------------------------------------------------
consensus_9199#3      ----------------------------------------------------------
consensus_9199#0      CATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTAAAAAAAAAAAAAAAAAAA 880
consensus_9199#1      CATGCCAGATGTATCTGCTATGTTATTACTTTCCAGTCTACCCACNAAAAAAAAAA-- 655