cluster # 9203

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Oryza sativa
cluster # 9203 cluster # 9203 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9203#0 length = 1154 sequences # 4

consensus_9203#1 length = 357 sequences # 1
consensus_9203#2 length = 226 sequences # 1

consensusID : consensus_9203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1154
fasta sequence

                              [GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC-ATACTTGGCTCC-TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK106073             [GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC ATACTTGGCTCC TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCT                                                                                ]
[+] EMBL AU091933             [                                                                                                                                                                                                                                                                                                                                                                                                                           TGCAATACTTGG TCCNTTATCTGAG ACCAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCC           AAAAAAAAAAAAA                                                         ]
[+] EMBL CF329044             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAA ]




>consensus_9203#0
GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGC
CGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGG
AGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCT
GCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCT
CCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGA
CACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTG
GATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTT
GGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGC
TAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATAT
CGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGA
GGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAAT
TCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACT
TGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTC
GTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGG
CTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAG
TTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCA
CCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAG
AATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCT
GGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

consensusID : consensus_9203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA]

[+] EMBL C74298               [NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA]




>consensus_9203#1
NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTT
TGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAA
CTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGC
CGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTG
GTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAG
GACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA

consensusID : consensus_9203#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG]

[+] EMBL BI808478             [GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG]




>consensus_9203#2
GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCT
TTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAAT
CAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCT
TCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9203#0      GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGC 60
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      CGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGG 120
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      AGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCT 180
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      GCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCT 240
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      CCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGA 300
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      CACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTG 360
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      GATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTT 420
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      GGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGC 480
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      TAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGAT-A 539
consensus_9203#2      ------------------------------GCTAGAGGCAAACATCAGTACTGGTGATGA 30
consensus_9203#1      ---------------NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGA 45
                                                        * * **   * * *   **  **  *

consensus_9203#0      TCGAGACCTTCAGGTTT-GTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTG--CTCTGA 596
consensus_9203#2      TCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAG-CTTATGTTCCCTAGTGGCTCTTGA 89
consensus_9203#1      G-GAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCT 104
                        ***        **** *  *   *  *     *       *      *          

consensus_9203#0      AGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCA-GAATGGGCAGCGGTAACAGG 655
consensus_9203#2      AGGAGGATGTTCAACATAGAA-CAAGGGAAATCAATGCA-GAATGGC--ACGGTAACAGG 145
consensus_9203#1      TGCTGCCT-TACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGG 163
                       *  *  * * *  **        **    *      *  *  ***    *** **  **

consensus_9203#0      AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGA-TATCTTCA-AAA 713
consensus_9203#2      AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAA 205
consensus_9203#1      CGTTATCTGTTC-TACGCCGCTGCATACTTG-GCTCCTTATCTGAGAACAAATTTATCAC 221
                       *   **  *    **     *  * *     *** * **  * ***  *  ** *  * 

consensus_9203#0      GGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAA 773
consensus_9203#2      GGAGACTTGATGAGCCCTACG--------------------------------------- 226
consensus_9203#1      TGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTC 281
                       *   *  ** ***  *                                           

consensus_9203#0      CAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACT 833
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      AGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTT 341
                                                                                  

consensus_9203#0      CCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGT 893
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      GAGGCTANTTTCCCTA-------------------------------------------- 357
                                                                                  

consensus_9203#0      TTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAG 953
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      TGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATT 1013
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      CAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTT 1073
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      TATGCCTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1133
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      AAAAAAAAAAAAAAAAAAAAA 1154
consensus_9203#2      ---------------------
consensus_9203#1      ---------------------