These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 715 fasta sequence [ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC] [+] EMBL CB674923 [ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC] [-] EMBL AU030922 [ tttTTGCNAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTA CACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACNGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACNGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACNGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCNCGg ] [-] EMBL OSC22031 [ AACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCA ] consensusID : consensus_9204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 625 fasta sequence [TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT] [-] EMBL AU165575 [TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCC ] [+] EMBL CF329171 [ tttttttAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGAAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCTAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT] consensusID : consensus_9204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG] [-] EMBL BI806422 [TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9204#0 ------------------------------------------ACAAACCCCTCCCCTTGT 18 consensus_9204#1 ------------------------------------------------------------ consensus_9204#2 TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATAC 60 consensus_9204#0 CGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGC 78 consensus_9204#1 -------------------------TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGC 35 consensus_9204#2 TGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGC 120 ********************** consensus_9204#0 TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 131 consensus_9204#1 TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 88 consensus_9204#2 TGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGC 180 ********* * ***** *** ** ***************** ******** *** * consensus_9204#0 CGATTACAA-CGGGAG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 185 consensus_9204#1 CGATTACAA-CGGGNG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 142 consensus_9204#2 CGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGA 240 ********* **** * ***** * ******** ***************** ****** consensus_9204#0 ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCC 245 consensus_9204#1 ACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCC 202 consensus_9204#2 ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCC 300 ************************** ************** ********** ******* consensus_9204#0 CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 300 consensus_9204#1 CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 257 consensus_9204#2 CGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCA 360 * ********** ******** ****** **** ** *** **************** consensus_9204#0 -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGA 358 consensus_9204#1 -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGA 315 consensus_9204#2 CACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAG-ACCAGTGA 419 ****** ***************** *** ** ******* ******** ******** consensus_9204#0 -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 409 consensus_9204#1 -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 366 consensus_9204#2 AGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG----- 474 **** **** **** ***** *********** * *** ****** * consensus_9204#0 GTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGG 469 consensus_9204#1 GTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGG 426 consensus_9204#2 ------------------------------------------------------------ consensus_9204#0 CCTTTGTTCATGGACCGTGGCACAACT--GCTGCCCAATGATTTTGGCATCTGTGGTTTT 527 consensus_9204#1 CCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCA 486 consensus_9204#2 ------------------------------------------------------------ consensus_9204#0 AAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGG 587 consensus_9204#1 AAAGAACATTTC----ATTGAGCACTTACCGTGGCACAA-CTGCTGC-CCAATGATTTTG 540 consensus_9204#2 ------------------------------------------------------------ consensus_9204#0 GCCTTTTCAGTCAATGATATACCAAAGATTTTG-CAGCCATTTGTATTAAGACACTTGTT 646 consensus_9204#1 GCATCTGTGGTT--TTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAAT--CC 596 consensus_9204#2 ------------------------------------------------------------ consensus_9204#0 ATTTGATT-CATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACT 705 consensus_9204#1 ACTTCATCGCCTGCTTGGGCCTTTTCAGT------------------------------- 625 consensus_9204#2 ------------------------------------------------------------ consensus_9204#0 CATCTAGCAC 715 consensus_9204#1 ---------- consensus_9204#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||