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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 715 fasta sequence
[ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC]
[+] EMBL CB674923 [ACAAACCCCTCCCCTTGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCAC]
[-] EMBL AU030922 [ tttTTGCNAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTA CACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACNGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCGTGGCACAACNGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACNGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCNCGg ]
[-] EMBL OSC22031 [ AACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCA ]
consensusID : consensus_9204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 625 fasta sequence
[TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT]
[-] EMBL AU165575 [TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGNGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCC ]
[+] EMBL CF329171 [ tttttttAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGAAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCTAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGT]
consensusID : consensus_9204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG]
[-] EMBL BI806422 [TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATACTGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGCTGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGCCGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCCCGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCACACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAGACCAGTGAAGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9204#0 ------------------------------------------ACAAACCCCTCCCCTTGT 18
consensus_9204#1 ------------------------------------------------------------
consensus_9204#2 TTTTTTTTTTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACCGGGTCGCCATAC 60
consensus_9204#0 CGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGC 78
consensus_9204#1 -------------------------TTTTTTTTNTNTTTAAGCAAGCCCTCTAAAAGGGC 35
consensus_9204#2 TGTGGACATTGGGACACACTTAAGGGTGGGCTAACCACTAAGCAAGCCCTCTAAAAGGGC 120
**********************
consensus_9204#0 TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 131
consensus_9204#1 TGTCTTAACGGA--CAAATTGAAAAA-TATGCAAGTAGGTCAGG-CAACATAA--ATG-C 88
consensus_9204#2 TGTCTTAACCGGACCAAATNGAACAACTATGCAAGTAGGTCAGGGCAACATAACAATGGC 180
********* * ***** *** ** ***************** ******** *** *
consensus_9204#0 CGATTACAA-CGGGAG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 185
consensus_9204#1 CGATTACAA-CGGGNG-CTTAAAA--TAGGAGCA-ACGTTAAGAGGTTCAAAG-CTTAGA 142
consensus_9204#2 CGATTACAAGCGGGAGGCTTAACAACTAGGAGCACNCGTTAAGAGGTTCAAAGGCTTAGA 240
********* **** * ***** * ******** ***************** ******
consensus_9204#0 ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCC 245
consensus_9204#1 ACTTAGAAGTGCATTACAACAAACTTCACAAGCATCCTTCGTGTATCATCTGCATTTCCC 202
consensus_9204#2 ACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGGGTATCATCTGGATTTCCC 300
************************** ************** ********** *******
consensus_9204#0 CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 300
consensus_9204#1 CT--GTCATCATCCTGGATGCGG-TAGCAC-AGCC-TGTGGAAATGCTGAAGTTGAGGCA 257
consensus_9204#2 CGTGGTCATCATCCGGGATGCGGGTAGCACCAGCCGTGGGGANNTGCTGAAGTTGAGGCA 360
* ********** ******** ****** **** ** *** ****************
consensus_9204#0 -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGA 358
consensus_9204#1 -ACAAGCACGTAGAGGGACGAGATA-GCCAGAATAGAAGTTGTGTCCTCAGCACCAGTGA 315
consensus_9204#2 CACAAGCCCGTAGAGGGACGAGATACGCCCGACGGGAAGTTGNGTCCTCAG-ACCAGTGA 419
****** ***************** *** ** ******* ******** ********
consensus_9204#0 -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 409
consensus_9204#1 -GTAT-GATA-CTAATGTTGG--TCCCTATTTCTGC---AAGCAT-ACTCCCTGGATACA 366
consensus_9204#2 AGTATTGATAACTAAGGTTGGGTCCCCTATTTCTGAGGAAGACATTACTCCCCTG----- 474
**** **** **** ***** *********** * *** ****** *
consensus_9204#0 GTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGG 469
consensus_9204#1 GTAAATGTATCAGATCATCGTATTCACTGCTGNAATATCAACGACCCTGCCAACAACAGG 426
consensus_9204#2 ------------------------------------------------------------
consensus_9204#0 CCTTTGTTCATGGACCGTGGCACAACT--GCTGCCCAATGATTTTGGCATCTGTGGTTTT 527
consensus_9204#1 CCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCA 486
consensus_9204#2 ------------------------------------------------------------
consensus_9204#0 AAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGG 587
consensus_9204#1 AAAGAACATTTC----ATTGAGCACTTACCGTGGCACAA-CTGCTGC-CCAATGATTTTG 540
consensus_9204#2 ------------------------------------------------------------
consensus_9204#0 GCCTTTTCAGTCAATGATATACCAAAGATTTTG-CAGCCATTTGTATTAAGACACTTGTT 646
consensus_9204#1 GCATCTGTGGTT--TTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAAT--CC 596
consensus_9204#2 ------------------------------------------------------------
consensus_9204#0 ATTTGATT-CATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACT 705
consensus_9204#1 ACTTCATCGCCTGCTTGGGCCTTTTCAGT------------------------------- 625
consensus_9204#2 ------------------------------------------------------------
consensus_9204#0 CATCTAGCAC 715
consensus_9204#1 ----------
consensus_9204#2 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||