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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1239 fasta sequence
[CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAATGTGGTCAAACTATTGTGCCATGATTAGATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA-TTGACAATGGC-TTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCACGCTAAAAAAAAAAAA]
[+] EMBL AK064133 [CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAATGTGGTCAAACTATTGTGCCATGATTAGATTCACAACTGGCTTTTTGGCCTATTTGGACCGCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAAAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCA ]
[-] EMBL CB653239 [ AACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTTCTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATTTTTTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACAATTTTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTTTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCATTGGCAAGGTTCAGT ]
[-] EMBL CA762636 [ TTTCGTACTTCAATAATGAAATATCAGATGTTCTACTGACTTTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTNTGATGGGTATTATGCGTGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGTATTTCTGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TTGGACAACGATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGAGCTTGTTGACCTATCACTGATCTCATTGGCAAGATTCAGTTAGAGTTCTATGTGCCCGCTAAAAAAAAAAAA]
[-] EMBL CB653238 [ ATATCAGATGTTTTACTGACTTTGATTCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGGGCGGCATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCCCTATCTGTGTATTTCTGAGGAAGAGGGTTCAGCCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATCCAAGACTGTAGAGGATGATCTTTTGGACAGATGCAGTCGCTTGACAA TTGACAATGGC TGGGACAACAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCAGGTTACATATAGAAGGGTTTTAGAACATGGTTTACATGAACGAGACCCTTTTGTGCAGCTAGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTCTTTGGAGGGATTCAGTTAGAGTTCTct ]
[+] EMBL D43526 [ ACTACTCCAGGAAAAGTTATGANTGGNTTGTNCAATACCCTTTGCAAGATTACCTTGCTAAGGTCCAGGAAACTNTGCAGAAGGAAATNAAGAGACTGATTCANTATCTGTTTATTNNTNAGGAAGAGGGTTCAGGCCTCTTTTTGANGGCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGACTGTAGAGGATGANCTCNTGGNCAGATGCAGTCGCTTGACAATTTGTCAATGGCTTTGGNCANCAttnntt ]
consensusID : consensus_9208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTACAGTACTAGACTGTTGCTAGTTTTTAAATCCACAATGTCATATTTCTAGACATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCTCAATTTGAATCTAATGAAATGTCAACTTCAT]
[+] EMBL AK062782 [CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGCGGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATTGCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCCTGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTACAGTACTAGACTGTTGCTAGTTTTTAAATCCACAATGTCATATTTCTAGACATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCTCAATTTGAATCTAATGAAATGTCAACTTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9208#0 -------CGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGC 53
consensus_9208#1 CCTCACCCGCTTGACCTCGCCAATCGCCGGCGAGCGACAGGCGAGACGAGAGCCCGCGGC 60
*****************************************************
consensus_9208#0 GGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATT 113
consensus_9208#1 GGCGGCAGCGGCGGCGGCGATCAGGACCCGATCCTCACCGGCGCACTTCTCCTGTTCATT 120
************************************************************
consensus_9208#0 GCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCC 173
consensus_9208#1 GCAGGAGCAAAGCAGTAAAAATGAACGAGCACCTCCGCTTTGAGGATGGCTGGAAGATCC 180
************************************************************
consensus_9208#0 TGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAA 233
consensus_9208#1 TGGAACAGGGGATTGTGAAATGCTCAAAGCTTTTGGAGGATTGCCCTGGTGGAAGGCCAA 240
************************************************************
consensus_9208#0 CTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACC 293
consensus_9208#1 CTGTGAATGAGTACATGAATTACTATGATTGCGCTTACCGGATGGCTGTGCAGAAAGACC 300
************************************************************
consensus_9208#0 AGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAA 353
consensus_9208#1 AGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAA 360
************************************************************
consensus_9208#0 TGGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTGTGAAAA 413
consensus_9208#1 TGGTACTACAGTACTAGACTGTT--GCTAGTTTTTAAATCCACAATGTCATATTTCTAGA 418
**** *** * ** * ** ** * ** * * * * *
consensus_9208#0 TGTGGTCAAACTATTGTGCCATGAT-TAGATTCACAACTGGCTTTTTGGCCTATTTGGAC 472
consensus_9208#1 CATAGCCAAGTAAGTTTATTGTGTTGCATAATGATGATTGAAATCCT---CAATTTGAAT 475
* * *** * * * ** * * * * * * ** * * * ***** *
consensus_9208#0 C-GCTGCTTTGTTACACATAAGAAACTACCTTCGCTTGAAGACGCTGCTGCTACTTCTTT 531
consensus_9208#1 CTAATGAAATGTCA-ACTTCAT-------------------------------------- 496
* ** *** * ** * *
consensus_9208#0 CTTTTCTCCAGTCTTTTCCTACTTCAATAATGAAATATCAGATGTTCTACTGACTCTGAT 591
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 TCGCCAAGAGCGTGATGGATGCAATGTTGATATGGATCTTTTGATGGGTATTATGCGTGG 651
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 CATATGTCGTTCTGAAGTCAAAACCAAGCTGAAAAGTGCTGTTATTCAAGATACATACTT 711
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 GTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGC 771
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 TAAGGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGTATTTC 831
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 TGAGGAAGAGGGTTCAGGCCTCTGTTTGAAGGCTGTTAGTGCTCCATTGATGCAAGCTTA 891
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 TGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGAC 951
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 TGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATGGCTTGGACAA 1011
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 CAATTCTTTCAGTCACATGGAGTAGTAAGGTAGCATTAGCTAACATCTGCCTATAAGCCA 1071
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 GGTTACATATAGAAGGGTTTTAGAACATGGTCTACATGAACGAGAACCTTTTGTGCAGCT 1131
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 AGGTTTTTGCGATAGCTCGAAGCTGCCACGTATAGATCTTGTTGACCTATCACTGATCTC 1191
consensus_9208#1 ------------------------------------------------------------
consensus_9208#0 ATTGGCAAGATTCAGTTAGAGTTCTATGTGCACGCTAAAAAAAAAAAA 1239
consensus_9208#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||