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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1173 fasta sequence
[CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTCCTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATG-AGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTT-CCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATG-CCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAAT-CTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACAGTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGGGGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGAGTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN]
[+] EMBL AK106382 [CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTCCTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATG AGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTT CCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATG CCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAAT CTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACA ]
[+] EMBL AU175046 [ ACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGCGCCACCTCGCCGGCGG GCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCTCTTCCTCCACGGATGCTGGAGCTGCGTA NTATCGAGAGGGAGAGGACGCTGGCGATGATCAAACCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGATTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGA CATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATT ]
[+] EMBL AU175047 [ ATGNAGCTTTAGTCCTGTAGAGGATAGACCGGTGTATATGCGACATGTCGTAAGGCAGAT ATTTTGCAGTTTATTTGTTCCCTTACAGTGCCTAACACCTGGTTGGNCGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTNGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATACTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGTTAGCAATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACAGTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGGGGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGAGTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN]
consensusID : consensus_9210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGCCTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG]
[-] EMBL CF330575 [TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGCCTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG]
consensusID : consensus_9210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[CTAATGAGCATTAGACCCACATGTGGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA]
[+] EMBL BI804939 [CTAATGAGCATTAGACCCACATGTGGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTGTAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCAGTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGGAAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGTAAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTTTTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGCCTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA]
consensusID : consensus_9210#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 48 fasta sequence
[CACGGGAGACCCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTC]
[+] EMBL CF330574 [CACGGGAGACCCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CCACCGCTAAGCTCCCTCCCTCCTCTCTCCGGCGCTTCCGCCTCGCCGGAGATGGGCGGC 60
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GCCACCTCGCCGGCGGCGCCCTGTCTCTCCGTCTGCTTGCTGCCCCTCCTCTTCCCCTTC 120
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CTCCACGGATGCTGGAGCTGCGTAGCTATCGAGAGGGAGAGGACGCTGGCGATGATCAAA 180
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CCGGACGGTCTATCTGGTAATTACACGGAGAGAATCAAGGAGGTCATCTTGGAGTCTGGA 240
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TTTGATATCGTCAAAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTAT 300
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGTGGTCCA 360
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ----------------TGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGG 44
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGGCGAGTTTTGATTGGG 420
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 CCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAAT-AGCATTAGAGCAATGTGTGG 103
consensus_9210#2 ----------------------------------CTAATGAGCATTAGACCCACATGTGG 26
consensus_9210#0 CCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAAT-AGCATTAGAGCAATGTGTGG 479
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ---AGTGGACTCAGAGAAAAACTGTGTGCATGGTTCA-GATTCACC-ACAATCTGCAGCC 158
consensus_9210#2 TGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAAGATTCACCCACAATCTGCAGCC 86
consensus_9210#0 ---AGTGGACTCAGAGAAAAACTGTGTGCATGGTTCA-GATTCACC-ACAATCTGCAGCC 534
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 218
consensus_9210#2 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 146
consensus_9210#0 AGAGAAATTTCATTTTTCTTTGGAGATGTTAGATCTGATACTGTGGAACATGATGAGCTG 594
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 278
consensus_9210#2 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 206
consensus_9210#0 TAGTCCTGTAGAGGATAGACAGGTGTATATGCGACATGTCGTAAGGCAGATAATTTTGCA 654
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 338
consensus_9210#2 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 266
consensus_9210#0 GTTTATTTGTTCCATACAGTGCCTAACACCTGGTTGGACGATGGGATTTGGATCCAATGG 714
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAGCTTTAAATTGTGTATGGT 398
consensus_9210#2 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGT 326
consensus_9210#0 AAATATCTGAACATCAGATGAGATGGAGTTCAAGGAAATTAACTTTAGATTGTGTATGGT 774
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 458
consensus_9210#2 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 386
consensus_9210#0 AAAGACCAGGACGGTGCATGCCAGAAACACCACTGAAGCACTCATCCAAATGTAATCGTT 834
consensus_9210#3 ----------------CACGGGAGACCCACCGCT-AAGCTCCCTCCCTCCTCTCTCCGGC 43
** * *** **** ** **** * * ** * * **
consensus_9210#1 TTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCGTAGC 518
consensus_9210#2 TTTGTACTGGTGCAAACTTGGGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGC 446
consensus_9210#0 TTTGTACTGGTGCAAACTTGTGCATCCAATCTTCTGTAAGCCTCGTATATTTAGCCTAGC 894
consensus_9210#3 GCTTC------------------------------------------------------- 48
*
consensus_9210#1 CTGTGCTGTTCATTTCAAAAAAAAAAAAAAAAACACTGTCATGCCGTGTACGTAG----- 573
consensus_9210#2 CTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATAAAAAAAAAA---------------- 490
consensus_9210#0 CTGTGCTGTTCATTTCAAAGAAATCGTTAGCCATCACGAACTACCCCTGTTTCTGATCGT 954
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TAGCGATGATAGTGATCTAAAATTTTGCTGATCATTGACCCTAAAATAAAATTCTGAACA 1014
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GTAATTTCAGAATCCAGAGAGCCCCTATGAGGCTATGACCTATCTGAAGTTCTGAACCGG 1074
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GGAGATTTCACGTGAGTTTTGTTTCTTGTAAATCATGGACAAAACTAACAGCAGAATTGA 1134
consensus_9210#3 ------------------------------------------------------------
consensus_9210#1 ---------------------------------------
consensus_9210#2 ---------------------------------------
consensus_9210#0 GTTTCTTCTCTCTGCTTTGCAATTAAAAAAAAAANAANN 1173
consensus_9210#3 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||