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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 841 fasta sequence
[TCCATCCTCCTGTCTACTGCTTCAGTGTTATGTTTTACTTTCAGAAGGACTTTCAATGATGTAGGCGGCCCTGAGGAATGAAAGCAATTCATTCCAATTACCAAGCATCTTCAATAGTGAGCAAGAGAGATTCATTCAGCATTTCGATCTTCTCCAGAAAGCACGTCTCCCTGAGCACATTACCTACTACAGTTTTAGGGAATCAGCTTCTCATGCATCCATAGCAGATCTGACCAAATATAACTTTTTTAAAGAAATTCATAAGATCACGCCGTCCTTGAGAGGCAGTTTTGCAAGTGAACCAGAAAAGCTCGCGGAGATCCGCCAGATAGAGCAGGTGGCTGAGCACAACAGAATAGCCCTAAACATCATCAGCCAAGTTGGAGCTGGTGATCCATCCCTGAGAGTTTCATTTGAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAAGGAGATCATAGTTTCCTCTTGAAGAAGAGCAAAAATTTTCCTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTCCAACACAGACTGCTGCTGTCTTGTTCATTGGTTCGTCCGGCTCCCTTATGTGCTTTAGGTTGTACAATGTACACCGTGTAACAATTTTGTAGACAAGAAAAG-AAAAGCTAAATGCTTAGTCACTAGATTTATTCTGTGAAAACAATTTTTT-GAGATGTTTATTCTACTAAACACGATTATACAAATGCTATGTAATTTCAGCGAGAAACATTTGCTGACAAATTGAGTTCAATTCATGAACTTTACATTGCAATGCAATTTTTAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAACTGTCATGCCGTT]
[+] EMBL CA766613 [TCCATCCTCCTGTCTACTGCTTCAGTGTTATGTTTTACTTTCAGAAGGACTTTCAATGATGTAGGCGGCCCTGAGGAATGAAAGCAATTCATTCCAATTACCAAGCATCTTCAATAGTGAGCAAGAGAGATTCATTCAGCATTTCGATCTTCTCCAGAAAGCACGTCTCCCTGAGCACATTACCTACTACAGTTTTAGGGAATCAGCTTCTCATGCATCCATAGCAGATCTGACCAAATATAACTTTTTTAAAGAAATTCATAAGATCACGCCGTCCTTGAGAGGCAGTTTTGCAAGTGAACCAGAAAAGCTTGCGGAGATCCGCCAGATAGAGCAGGTGGCTGAGCACAACAGAATAGCCCTAAACATCATCAGCCAAGTTGGAGCTGGTGGTCCATCCCTGAGAGTTTCATTTGAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAAAGAGATCATAGTTTCCTCTTGAAGAAGAGCAAAAATTTTCCTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTCCAACACAGACTGCTGCTGTCTTGTTCATTGGTTCGTCCGGCTCCCTTATGTGCTTTAGGTTGTACAATGTACACCGTGTAACAATTTTGTAGACAAGAAAAGNAAAAGCTAAATGCTTAGTCACTAGATTTATTCTGTGAAAACAATTTTTTGGAGATGNTTATTCAACTAAACACGATTATACAAATGCTATGTAATTTCAGCGAGAAA ]
[+] EMBL CF331168 [ TTGAGAGGCAGTTTTGCAAGTGAACCAGAAAAGCTCGCGGAGATCCGCCAGATAGAGCAGGTGGCTGAGCACAACAGAATAGCCCTAAACATCATCAGCCAAGTTGGAGCTGGTGATCCATCCCTGAGAGTTTCATTTGAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAAGGAGATCATAGTTTCCTCTTGAAGAAGAGCAAAAATTTTCCTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTCCAACACAGACTGCTGCTGTCTTGTTCATTGGTTCGTCCGGCTCCCTTATGTGCTTTAGGTTGTACAATGTACACCGTGTAACAATTTTGTAGACAAGAAAAG AAAAGCTAAATGCTTAGTCACTAGATTTATTCTGTGAAAACAATTTTTT GAGATGTTTATTCTACTAAACACGATTATACAAATGCTATGTAATTTCAGCGAGAAACATTTGCTGACAAATTGAGTTCAATTCATGAACTTTACATTGCAATGCAATTTTTAGCTGTAAAAAAAAAA ]
[-] EMBL CF331169 [ TGAGAGGCAGTTTTGCAAGTGAACCAGAAAAGCTCGCGGAGATCCGCCAGATAGAGCAGGTGGCTGAGCACAACAGAATAGCCCTAAACATCATCAGCCAAGTTGGAGCTGGTGATCCATCCCTGAGAGTTTCATTTGAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAAGGAGATCATAGTTTCCTCTTGAAGAAGAGCAAAAATTTTCCTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTCCAACACAGACTGCTGCTGTCTTGTTCATTGGTTCGTCCGGCTCCCTTATGTGCTTTAGGTTGTACAATGTACACCGTGTAACAATTTTGTAGACAAGAAAAG AAAAGCTAAATGCTTAGTCACTAGATTTATTCTGAAAAAACAATTTTTT GAGATGTTTATTCTACTAAACACGATTATACAAATGCTATGTAATTTCAGCGAGAAACATTTGCTGACAAATTGAGTTCAATTCATGAACTTTACATTGCAATGCAATTTTTAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAACTGTCATGCCGTT]
[-] EMBL CF313528 [ CGTCCGGCTCCCTTATGTGCTTTAGGTTGTACAATGTACACCGTGTAACAATTTTGTAGACAAGAAAAG AAAAGCTAAATGCTTAGTCACTAGATTTATTCTGTGAAAACAATTTTTT GAGATGTTTATTCTACTAAACACGATTATACAAATGCTATGTAATTTCAGCGAGAAACATTTGCTGACAAATTGAGTTCAATTCATGAACTTTACATTGCAATGCAATTTTTAGCTGTAAAAAA ]
consensusID : consensus_9215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[CTTAAAATTCTTTGTACGAACACTGCATGGCAACGGCGCAAGCTTGGGAAGAGTTTGCAGGATTGGAGTACCATTTCCATACAGTTGGAATTTGCGTTGAAAAGAGAATTCGGTGAAACTAGAAATGTCTTACCGCATGAGAACATGTGCATGAGAGTATCAAAGCAACTTCTGGTTTGGACTCAGGAACATACATATTGGGTTGCTTATCGGTTTCTCATATTGGGTTTTGAACTTGACCTGTATTCTCCGAGTGAATATTGTATGGTGTACTGGTACATGTATGTGGTCCTCATGAAGCTGATAGAGCAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGGATCATTCAAAAGACTCCTCAAGGGATACAGCGTTTCCATCCTCCTGTCTACTGCTTCAGTGTTATGTTTTACTTTCAGAAGGACTTTCAATGATGTTGGCGGCCCTGAGGAATGAAAGCAATTCATTCCAATTACCAAGCATCTTCAATAAGATTCATTCAGCATTTTCGATCTTCTCCAGANAGCACGTCTCCCTGAGCACATTACCTACTACAGTTTTAGGGAATCAGCTTCTCATGTATCCATAGCAGATCTGACCAAATATA]
[+] EMBL CF313527 [CTTAAAATTCTTTGTACGAACACTGCATGGCAACGGCGCAAGCTTGGGAAGAGTTTGCAGGATTGGAGTACCATTTCCATACAGTTGGAATTTGCGTTGAAAAGAGAATTCGGTGAAACTAGAAATGTCTTACCGCATGAGAACATGTGCATGAGAGTATCAAAGCAACTTCTGGTTTGGACTCAGGAACATACATATTGGGTTGCTTATCGGTTTCTCATATTGGGTTTTGAACTTGACCTGTATTCTCCGAGTGAATATTGTATGGTGTACTGGTACATGTATGTGGTCCTCATGAAGCTGATAGAGCAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGGATCATTCAAAAGACTCCTCAAGGGATACAGCGTTTCCATCCTCCTGTCTACTGCTTCAGTGTTATGTTTTACTTTCAGAAGGACTTTCAATGATGTTGGCGGCCCTGAGGAATGAAAGCAATTCATTCCAATTACCAAGCATCTTCAATAAGATTCATTCAGCATTTTCGATCTTCTCCAGANAGCACGTCTCCCTGAGCACATTACCTACTACAGTTTTAGGGAATCAGCTTCTCATGTATCCATAGCAGATCTGACCAAATATA]
consensusID : consensus_9215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[GGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGGAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAGTGAAGACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAGGGAAAAAGATGCAGTTACGAATTCTTGCTAGTAAT]
[+] EMBL CA764645 [GGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGGAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAGTGAAGACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAGGGAAAAAGATGCAGTTACGAATTCTTGCTAGTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9215#0 TCCATCCTCCTGTCTACTGCTTCAGTGTTATGTTTTACTTTCAGAAGGACTTTCAATGAT 60
consensus_9215#1 -----CTTAAAATTCTTTGTACGAACACTGCATGGCAACGGCGCAAG--CTTGGGAAGA- 52
consensus_9215#2 ----------------------------------------------------GGGAAAAA 8
* *
consensus_9215#0 GTAGGCGGCCCTGAGGAATGAAAGCAATTCATTCCAATTACCAAGCATCTTCAATAGTGA 120
consensus_9215#1 GTTTGCAGGATTGGAGTAC-----CATTTCCATACAGTTGGAATTTGCGTTGAAAAGAGA 107
consensus_9215#2 G--AAAAAGATGCAGTTACGAA--TTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGG 64
* * ** * * * ** ** *
consensus_9215#0 GCAAGAGAGATTCATTCAGCATTTCGATCTTCTCCAGAAAGCACGTCTCCCTGAGCACAT 180
consensus_9215#1 ATTCGGTGAA---ACTAGAAATGTC--TTACCGCATGAGAACATGTGCATGAGAGTATCA 162
consensus_9215#2 AAAAGAAAAA---GATGCAGTTACGAATTCTTGCTAGTA---ATGAAAACTCACGAAGAA 118
* * * * * * * * * * *
consensus_9215#0 TACCTACTACAGTTTTAGGGAATCAGCTTCTCATGCATCCA-TAGCAGATCTGAC-CAAA 238
consensus_9215#1 AAGCAACTTCTGGTTT--GGACTCAGGAACATACATATTGGGTTGCTTATCGGTTTCTCA 220
consensus_9215#2 AAG---------------GGAAAAAGAAAAAGATGCAGTTA--CGAATTCTTGCTAGTAA 161
* *** ** * * * * *
consensus_9215#0 TATAACTTTTTTAAAGAAATTCATAAGATC-ACGCCGTCCTTGAGAGGCAGTTTTGCAAG 297
consensus_9215#1 TATTGGGTTTTGAACTTGACCTGTATTCTCCGAGTGAATATTGTATGGTGTACTGGTACA 280
consensus_9215#2 TGAAAACTCACGAAGAAAAGGGAAAAAG---AAAAAGATGCAGTTACGAATTCTTGCTAG 218
* * ** * * * * * *
consensus_9215#0 TGAACCAGAAAAGCTCGCGGAGATCCGCCAGATAGAGCA-GGTG-GCTGAGCACAACAGA 355
consensus_9215#1 TGTAT--GTGGTCCTCATGAAGCT------GATAGAGCA-GATGCAGTTACGAATTCTTG 331
consensus_9215#2 TAGTG----AAGACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTG 274
* *** * ** * *** * * ** * * * *
consensus_9215#0 ATAGCCCTAAACA-TCATCAGCCAAGTTGGAGCTGGTGATCCATCCCTGAGAGTTTCATT 414
consensus_9215#1 CTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGGATCATTCAAAAGACTCCT 391
consensus_9215#2 CTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTACGAATTCTTG 334
*** * ** * *** * ** * * * * * * *
consensus_9215#0 TGAGTTTACACACCATCCACACTTTGCAGTCGCAGTTGTAAGGAGATCATAGTTTCCTCT 474
consensus_9215#1 CAAGGG-ATACAGCGTTTCCATCCTCCTGTCT--ACTGCTTCAGTGTTATGTTTTACTTT 448
consensus_9215#2 CTAGTA-ATGAAAA---------CTCACGAAGAAAAGGGAAAAAGAAAAAGATGCAGTTA 384
** * * * * * * * *
consensus_9215#0 TGAAGAAGAGCAAAAATTTTCCTACTTCACCTTCGTTATCAATGGCAGACGAGTCAGCTC 534
consensus_9215#1 C--AGAAGGACT----TTCAATGATGTTGGCGGCCCTGAGGAATGAAAGCAATTCATTCC 502
consensus_9215#2 C---GAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAA--GATGC 439
*** * * * * * *
consensus_9215#0 CAACAC-AGACTGCTGCTGTCTTGTTCATTGG-TTCGTCCGGCTCCCTTATGTGCTTTAG 592
consensus_9215#1 AATTACCAAGCATCTTCAATAAGATTCATTCA-GCATTTTCGATCTTCTCCAGANAGCAC 561
consensus_9215#2 AGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAAGAAAAAGATGC 499
** * * * * *
consensus_9215#0 GTTGTACAATGTACACCGTGTA--ACAATTTTGTAGACAAGAAAAGAAAAGCTAAATGCT 650
consensus_9215#1 GTCTCCCTGAGCACATTACCTACTACAGTTTT-------AGGGAATCAGCTTCTCATGTA 614
consensus_9215#2 AGTTACGAATTCTTGCTAGTAATGAAAACTCACGAAGAAAAGGGAAAAGGGAAAAAGATG 559
* * * * * * * *
consensus_9215#0 TAGTCACTAGATTTATTCTGTGAAAACAATTTTTTGAGATGTTTATTCTACTAAACACGA 710
consensus_9215#1 TCCATAGCAGATCTGACCAAATATA----------------------------------- 639
consensus_9215#2 CAGTTACGAATTCTTGCTAGTAAT------------------------------------ 583
* * * * *
consensus_9215#0 TTATACAAATGCTATGTAATTTCAGCGAGAAACATTTGCTGACAAATTGAGTTCAATTCA 770
consensus_9215#1 ------------------------------------------------------------
consensus_9215#2 ------------------------------------------------------------
consensus_9215#0 TGAACTTTACATTGCAATGCAATTTTTAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAACT 830
consensus_9215#1 ------------------------------------------------------------
consensus_9215#2 ------------------------------------------------------------
consensus_9215#0 GTCATGCCGTT 841
consensus_9215#1 -----------
consensus_9215#2 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||